Cbcb:Pop-Lab:Ted-Report: Difference between revisions
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(Figured out how to make linked references) |
(Added link to VisANT page where I'll upload my summary of it's features) |
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== May 15, 2009 == | == May 15, 2009 == | ||
* Read VisANT paper and user manual[http://visant.bu.edu/]. Determined VisANT will work for manual metabolic pathway analysis of even large scale data sets and can be automated by running in "Batch Mode". <br> | * Read [[VisANT]] paper and user manual[http://visant.bu.edu/]. Determined VisANT will work for manual metabolic pathway analysis of even large scale data sets and can be automated by running in "Batch Mode". <br> | ||
* Need to read about FastHMM[http://www.microbesonline.org/fasthmm/] | * Need to read about FastHMM[http://www.microbesonline.org/fasthmm/] | ||
* Still need to make "Welcome Wiki" for n00bs (read: new members) | * Still need to make "Welcome Wiki" for n00bs (read: new members) | ||
Revision as of 19:34, 15 May 2009
Summer 2009 Goals
- Research traditional approaches taken to gene-level analysis of metagenomic data
- Critically evaluate the traditional approaches in general and in the context of current Pop Lab projects
- Identify portions of the analysis that can be automated
- Develop scalable tools to do the automated analysis