Xanthomonas campestris pv raphani

Article

• Title: Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

... we describe the complete genome sequences of X. campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect Arabidopsis thaliana and rice, respectively, by colonizing the mesophyll tissue.

• Authors:

 /fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS/XCR_1.0.authors

• Journal of Bacteriology: JB05262-11: Manuscript Received

 http://jb.msubmit.net/cgi-bin/main.plex?el=A5GM6BAn3A6Lzm2F5A9ByOjwxKoNULvSLJArPSKrwZ

NCBI

XCR

 locus tag prefix	XCR	
 GenBank accession	CP002789	
 NCBI taxonomy	Xanthomonas campestris pv. raphani strain 756C	
 NCBI tax id	990315	http://www.ncbi.nlm.nih.gov/bioproject/990315
 NCBI project id	63187	http://www.ncbi.nlm.nih.gov/bioproject/63187
 traces 		
 trace assembly		

XOC

 locus tag prefix	XOC	
 GenBank accession	AAQN01000001	http://www.ncbi.nlm.nih.gov/nuccore/AAQN01000001
 NCBI taxonomy	Xanthomonas oryzae pv. oryzicola BLS256	http://www.ncbi.nlm.nih.gov/taxonomy/383407
 NCBI tax id	383407	http://www.ncbi.nlm.nih.gov/taxonomy/383407
 NCBI project id	16740	http://www.ncbi.nlm.nih.gov/bioproject/16740
 shotgun traces 	57645 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=ncbi_project_id=16740
 finishing traces 	919 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&s=search&m=obtain&retrieve=Search&val=SPECIES_CODE%3D%27XANTHOMONAS+ORYZAE+PV.+ORYZICOLA+BLS256%27
 total traces	58353 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&s=search&m=obtain&retrieve=Search&val=SPECIES_CODE%3D%27XANTHOMONAS+ORYZAE+PV.+ORYZICOLA%27
 trace assembly	1 contig	http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&ai=1290&m=main&s=browse

Locations

XCR

• Mike's final assembly

 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.frg
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.asm
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.scaffolds.fasta
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted//autoJoin/results/Xca-retrim.fasta
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.bnk

NCBI submission

XCR

 /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank       #older
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank.redo  #latest
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS

XOC

 /fs/szasmg/Bacteria/Xanthomonas/Xoc/genbank