Burkholderia mallei

Data

NCBI

 Genome Projects
 11 Genome Projects, 10 TIGR, 1 JCVI
 TIGR: 4 complete, 6 draft
 JCVI: 1 progress, no assembly available (Aug 19th 2008)

Genome projects

    1  Burkholderia mallei 2002721280  [TIGR]
    2  Burkholderia mallei ATCC 10399 [TIGR]
    3  Burkholderia mallei ATCC 23344 [TIGR]
    4  Burkholderia mallei FMH [TIGR]
    5  Burkholderia mallei GB8 horse 4 [TIGR]
    6  Burkholderia mallei JHU [TIGR]
    7  Burkholderia mallei NCTC 10229 [TIGR]
    8  Burkholderia mallei NCTC 10247 [TIGR]
    9  Burkholderia mallei PRL-20 [TIGR]
   10  Burkholderia mallei SAVP1 [TIGR]

AA:

    Assembly Name                   Submit. AssID   TaxID   TotalLength     #Contigs        #Traces Cov      Comment
 1. Burkholderia mallei 10229       TIGR    852     320386  5,742,303       2               97,133  13.1X    tarchive2amos: ERROR - gap placement outside of contig
 2. Burkholderia mallei 10399       TIGR    625     320387  5,933,783       106             67,042  8.9X
 3. Burkholderia mallei 2002721280  TIGR    971     370895  5,690,468       208             58,158  8.3X
 4. Burkholderia mallei ATCC 23344  TIGR    20*     243160  5,835,527       2               82,118  8.2X     assembly can be viewed online but not avail. for download
 5. Burkholderia mallei FMH         TIGR    656     334802  5,814,647       205             66,302  8.5X     tarchive2amos: ERROR - gap placement outside of contig
 6. Burkholderia mallei GB8 horse 4 TIGR    627     320390  5,804,858       181             57,633  7.5X
 7. Burkholderia mallei JHU         TIGR    655     334803  5,713,799       184             67,018  8.5X
 8. Burkholderia mallei NCTC 10247  TIGR    2385    320389  5,848,380       2               56,079  7.6X     some traces are missing from AA download but are present in TA_FTP
 9. Burkholderia mallei PRL-20      TIGR    2706    436115  5,669,492       272             60,248  7.9X
10. Burkholderia mallei SAVP1       TIGR    2383    320388  5,232,401       2               57,382  8.3X

File locations:

 /fs/szasmg2/Bacteria/Burkholderia_mallei/

Insignia

 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2383.complete
 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2385.complete.missing_traces.fixed
 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2706
 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-625
 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-627
 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-655
 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-656.gap_err
 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-852.complete.gap_err
 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-971
 
 /fs/szasmg2/Bacteria/Burkholderia_mallei/ATCC_23344/best/ : completed by TIGR (4 pieces by AMOSCmp)
 ??? Was it used as reference to compute signitures?