Short read sequencing

Articles discussed

06/13/2008

• The complete genome of an individual by massively parallel DNA sequencing (J.Watson's genome) Nature April 2008
• J.Watson's genome (supplementary info)
• Whole-genome sequencing and variant discovery in C. elegans Nature Jan 2008

06/20/2008

• SOAP web site (China)
• SOAP: short oligonucleotide alignment program, Bioinformatics Jan 2008

• Sourceforge Maq

• RMAP

• SHRiMP

• BLAT—The BLAST-Like Alignment Tool, Genome Research 2002

Other

Ben's web sites

• Ben's 1
• Ben's 2