Megachile rotundata

Data

Original Traces

 cat trace.count | grep _1_ | sed 's/_sequence.txt//' | perl -ane 'print "  ",$F[1],"\t",$F[0]/4,"\t",$F[0]/2,"\n";'

 lib        insert   mates           reads        readLen   ~coverage(500M genome)
 s_2_1_3kbp 3000     21563283        43,126,566   124       11
 s_2_1_5kbp 5000     36218589        72,437,178   35        5
 s_2_1_8kbp 8000     198377          396,754      35        0.02
 s_3_1      475      35548153        71,096,306   124       18
 s_4_1      475      35471044        70,942,088   124       18
 s_5_1      475      35616846        71,233,692   124       18
 s_6_1      475      35303840        70,607,680   124       18
 s_7_1      475      34893313        69,786,626   124       18

Location

 /fs/szattic-asmg5/Bees/Megachile_rotundata/error_correction/large_libs/s_?_?_?kb.sequence.cor.all.txt
 ftp://ftp.cbcb.umd.edu/pub/data/assembly/Megachile_rotundata/reads/s_?_?_?kb.sequence.cor.all.txt.gz

CA

• Version: 6.1

 /fs/szdevel/dpuiu/SourceForge/wgs-6.1/Linux-amd64/bin/runCA

Location

 mulberry:/scratch2/dpuiu/Megachile_rotundata