Assembly merge

Cases

No reference assembly

One data set, multiple denovo assemblers

Example:

 * Solexa data
 * edena & velvet assemblers

Solutions:

 * merge 2 assembly sets
 * run minimus on them

Multipls data sets, one(multiple) denovo assemblers

Example:

 Solexa & 454 data
 velvet assemblers for each set

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Examples

Pseudomonas_syringae

Assemblies

 assembler   type         #ctgs   min     max     mean            stdev           sum
 AMOScmp     comparative  187     20      577929  34863.06        91692.34        6519394

 edena       denovo       14084   100     5075    210.92          145.68          2970720
 velvet      denovo       25161   45      5057    241.83          212.61          6084887

 edena-sim   denovo       2068    100     47881   2994.03         4857.76         6191673
 velvet-sim  denovo       2207    45      56810   2820.91         5348.36         6225757