Pseudodomonas syringae

Pseudodomonas syringae strain DC 3000

Originally sequenced and finished at TIGR

UNC:

New sequence:

 Solexa 3 lanes; 
 454 shotgun 1/4 Plate (250bp read); 
 454 paired ends 1/4 Plate.	

http://biology622.dhcp.unc.edu/~labweb/DCData/

• Theoretical minimum number of contigs we can obtain is 268 (our reads fail to cover 269 nucleotides).
• Our de novo assembly spans the genome in 853 contigs totaling 6,313,026 bp.
• 98.7% of the genome is covered by a contig;
• 84% of the genome is covered by contigs 10,000 bp or greater.
• The average gap size between contigs is 98 bp;
• average contig size 7401 bp.
• The N50 = 37,444 bp.
• Our largest BAMBUS "scaffold" is 2,565,761 bp,