Salmonella other
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!!! OLD : should be removed
Data
NCBI
Genome Projects 26 listed, 5 complete 1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 [TIGR] 2 Salmonella enterica subsp. enterica serovar Agona str. SL483 [J. Craig Venter Institute] 3 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 [Chang Gung Memorial Hospital] complete 4 Salmonella enterica subsp. enterica serovar Dublin [University of Illinois at Urbana-Champaign] 5 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 [TIGR] 6 Salmonella enterica subsp. enterica serovar Enteritidis str. LK5 [University of Illinois at Urbana-Champaign] 7 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 [J. Craig Venter Institute] 8 Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 [TIGR/JCVI/J. Craig Venter Institute] 9 Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 [J. Craig Venter Institute] 10 Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191 [J. Craig Venter Institute] 11 Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 [TIGR] 12 Salmonella enterica subsp. enterica serovar Newport str. SL254 [TIGR/J. Craig Venter Institute] 13 Salmonella enterica subsp. enterica serovar Newport str. SL317 [J. Craig Venter Institute] in TA but not AA; 63 contigs; shold be submitted to AA!! 14 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 [Washington University (WashU)] complete 15 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 [Peking University Health Science Center] 16 Salmonella enterica subsp. enterica serovar Pullorum [University of Illinois at Urbana-Champaign] 17 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 [TIGR] 18 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29 [TIGR] 19 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 [TIGR] 20 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 [J. Craig Venter Institute] 21 Salmonella enterica subsp. enterica serovar Typhi Ty2 [University of Wisconsin-Madison, USA] complete 22 Salmonella enterica subsp. enterica serovar Typhi str. CT18 [Sanger Institute] complete 23 Salmonella typhimurium DT104 [Sanger Institute] 24 Salmonella typhimurium LT2 [Washington University (WashU)] complete 25 Salmonella typhimurium SL1344 [Sanger Institute] 26 Salmonella typhimurium TR7095 [Washington University (WashU)] TA: 1 salmonella_enterica_subsp__enterica_serovar_4__5__12_i___str__cvm23701 2 salmonella_enterica_subsp__enterica_serovar_agona_str__sl483 3 salmonella_enterica_subsp__enterica_serovar_dublin_str__ct_02021853 4 salmonella_enterica_subsp__enterica_serovar_hadar_str__ri_05p066 : not in Genome Projects/AA (JCVI MSC) 5 salmonella_enterica_subsp__enterica_serovar_heidelberg_str__sl476 6 salmonella_enterica_subsp__enterica_serovar_heidelberg_str__sl486 7 salmonella_enterica_subsp__enterica_serovar_javiana_str__ga_mm04042433 8 salmonella_enterica_subsp__enterica_serovar_kentucky_str__cdc_191 9 salmonella_enterica_subsp__enterica_serovar_kentucky_str__cvm29188 10 salmonella_enterica_subsp__enterica_serovar_newport_str__sl254 11 salmonella_enterica_subsp__enterica_serovar_newport_str__sl317 12 salmonella_enterica_subsp__enterica_serovar_saintpaul_str__sara23 13 salmonella_enterica_subsp__enterica_serovar_saintpaul_str__sara29 14 salmonella_enterica_subsp__enterica_serovar_schwarzengrund_str__cvm19633 15 salmonella_enterica_subsp__enterica_serovar_schwarzengrund_str__sl480 16 salmonella_enterica_subsp__enterica_serovar_virchow_str__sl491 : not in Genome Projects/AA (JCVI MSC) 17 salmonella_enterica_subsp__enterica_serovar_weltevreden_str__hi_n05_537 : not in Genome Projects/AA (JCVI MSC) AA: 1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 TIGR 2740 440534 4,895,918 113 53,284 8.0X 2 Salmonella enterica subsp. enterica serovar Agona str. SL483 JCVI 2924 454166 4,835,750 56 51,307 9.5X 3 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TIGR 2741 439851 4,885,976 142 50,129 7.8X 4 Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 JCVI 2995 465516 4,793,325 50 50,470 9.6X 5 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 JCVI 2927 454169 5,083,392 49 54,058 9.2X 6 Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 JCVI 2925 454164 4,728,232 48 53,785 10.1X 7 Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 JCVI 2921 454167 4,553,049 74 52,375 9.9X 8 Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191 JCVI 2922 454231 4,696,566 53 51,826 9.6X 9 Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 TIGR 2737 439842 5,000,919 75 55,311 9.1X 10 Salmonella enterica subsp. enterica serovar Newport str. SL254 JCVI 2926 423368 4,831,246 2 50,473 8.8X 11 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 TIGR 2735 439846 4,785,870 143 50,936 8.6X 12 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29 TIGR 2739 439847 4,928,961 182 50,405 7.9X 13 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 TIGR 2738 439843 4,734,042 160 49,533 7.4X 14 Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 JCVI 2923 454165 4,761,576 67 50,418 9.1X 15 Salmonella enterica subsp. enterica serovar Virchow str. SL491 JCVI 2996 465517 4,858,188 73 54,841 10.3X 16 Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 JCVI 2994 465518 5,047,463 81 54,390 9.8X
TIGR/JCVI
MSC
Sanger
Salmonella comparative sequencing project Salmonella ftp Salmonella paratyphi A project Salmonella paratyphi A ftp Salmonella typhi project Salmonella typhi ftp includes 454 Organism Size(Mb) G+C Status Funding Contigs Traces Name 1 Salmonella bongori 4.46 51.3% Finished Beowulf Genomics 1 75084 SB 2 Salmonella enteritidis PT4 4.686 52.17% Finished Beowulf Genomics 2 68660 PT4 3 Salmonella gallinarum 287/91 4.747 52.2% Finished Beowulf Genomics 2 80266 SG 4 Salmonella enterica Hadar 4.786 52.3% Finished Wellcome Trust 3 79998 HADAR 5 Salmonella enterica Infantis 4.711 ~52.3% Finished Wellcome Trust 1 98013 SIN 6 Salmonella paratyphi A 4.582 52.2% Finished Wellcome Trust 2 81421 spa 7 Salmonella typhimurium DT104 5.02 52.1% Finished Beowulf Genomics 2 76534 DT104 8 Salmonella typhimurium D23580 ~5.0 ~52% Fin/gap clos. Wellcome Trust 31 88293 D23580 9 Salmonella typhimurium DT2 ~5 ~52% Shotgun Progr. Wellcome Trust 17 23552 DT2 10 Salmonella typhimurium SL1344 5.067 52.2% Finished Beowulf Genomics 4 81802 SL1344 11 Salmonella typhi 4.81 52.1% Finished Beowulf Genomics 1 0 st