Cbcb:Pop-Lab:Bo-Report:metagenomicsData

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Metagenomic Date Sets

The following table shows some metagenomic datasets that are available locally. All the DNA sequences are downloaded directly from NCBI TraceArchive or Short Read Archive without any preprocessing.

Metagenomics Project Data Location More Information
UBA Acid Mine Drainage Biofilm Metagenome /fs/szdata/metagenomes/reads/acidMine/acidMineUba.fasta http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18537
5-Way (CG) Acid Mine Drainage Biofilm Metagenome /fs/szdata/metagenomes/reads/acidMine/acidMineCg.fasta http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13696
Antarctica Aquatic Microbial Metagenome /fs/szdata/metagenomes/reads/antarctica/antarctica.fasta http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=33179
Metagenomic Water Samples from Rita Colwell /fs/szdata/metagenomes/reads/freshwaterUMIGS/freshwaterUMIGS1.fasta /fs/szdata/metagenomes/reads/freshwaterUMIGS/freshwaterUMIGS2.fasta
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