Cbcb:Pop-Lab:Bo-Report:metagenomicsData
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Metagenomic Date Sets
The following table shows some metagenomic datasets that are available locally. All the DNA sequences are downloaded directly from NCBI TraceArchive or Short Read Archive without any preprocessing.
| Metagenomics Project | Data Location | More Information |
|---|---|---|
| UBA Acid Mine Drainage Biofilm Metagenome | /fs/szdata/metagenomes/reads/acidMine/acidMineUba.fasta | http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18537 |
| 5-Way (CG) Acid Mine Drainage Biofilm Metagenome | /fs/szdata/metagenomes/reads/acidMine/acidMineCg.fasta | http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13696 |
| Antarctica Aquatic Microbial Metagenome | /fs/szdata/metagenomes/reads/antarctica/antarctica.fasta | http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=33179 |
| Metagenomic Water Samples from Rita Colwell | /fs/szdata/metagenomes/reads/freshwaterUMIGS/freshwaterUMIGS1.fasta /fs/szdata/metagenomes/reads/freshwaterUMIGS/freshwaterUMIGS2.fasta |
http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=33243 |
| Gut metagenomes collected from 13 healthy individuals (Japan) | ||