Cbcb:Pop-Lab:How-to

How-To repository

Getting started at the CBCB
Cbcb:Pop-Lab:AMOS-CVS How to use AMOS through CVS
Cbcb:Pop-Lab:AMOScmp-SR How to use AMOScmp with short read data
How do I annotate a genome at the CBCB?
How do I run the new Bambus?
How do I use the antibiotic resistance database?
How do I use the antibiotic resistance database locally?
How do I run jobs on the grid?
How do I create OTUs from 16S rRNA sequence data?
How do I compare metagenomic datasets through the metastats website?
How do I compare metagenomic datasets using R directly?
How do I find CRISPRs in a new genome?
Cbcb:Pop-Lab:SOMA How do I scaffold a genome using optical maps (both locally and through the web)
How do I generate graph information out of Minimus?
What tools are available for doing in silico finishing at the CBCB?
How do I generate a scaffold graph starting from a 454 .ace file?
How do I draw a pretty picture of a scaffold stored in an AMOS bank?
How do I use the partition software?
Cbcb:Pop-Lab:16S-pipeline 16S analysis pipeline (for Gates project)