Bumblebee

Data

• Location:

 /fs/szattic-asmg4/Bees/Bombus_impatiens

• There are 7 pairs of data files (paired ends) : lanes 1..3,5..8 (lane 4 wasn't used)

• Tasks to figure out:

1. Erroneous reads/bases, which we need to correct or discard
2. GC bias, so we can compute a-stats properly
3. Redundancy in the long paired ends, which are lane 1 and lane 2.

• Lane 1: 3Kbp insert; 34,944,099 reads
• Lane 3: 8Kbp insert; 32,540,640 reads

• Formatting:

Assembly

 /fs/szdevel/dpuiu/SourceForge/wgs-assembler.030210/Linux-amd64/bin/runCA