Data
Original Traces
- 8 pairs of data files (paired ends)
cat trace.count | grep _1_ | sed 's/_sequence.txt//' | perl -ane 'print " ",$F[1],"\t",$F[0]/4,"\t",$F[0]/2,"\n";'
lib insert mates reads readLen ~coverage(500M genome) reverse adaptors comments
s_2_1_3kbp 3000 21563283 43,126,566 124 11 ? circularizarion
s_2_1_5kbp 5000/300 36218589 72,437,178 35 5 yes ? insert size is << 5kbp
s_2_1_8kbp 8000 198377 396,754 124 0.1 ? ?
s_3_1 475 35548153 71,096,306 124 18
s_4_1 475 35471044 70,942,088 124 18
s_5_1 475 35616846 71,233,692 124 18
s_6_1 475 35303840 70,607,680 124 18
s_7_1 475 34893313 69,786,626 124 18
Adaptors
>circularizarion
CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA
>circularizarion.revcomp
TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG
Location
/fs/szattic-asmg5/Bees/Megachile_rotundata/error_correction/large_libs/s_?_?_?kb.sequence.cor.all.txt
ftp://ftp.cbcb.umd.edu/pub/data/assembly/Megachile_rotundata/reads/s_?_?_?kb.sequence.cor.all.txt.gz
Assemblies
/fs/szdevel/dpuiu/SourceForge/wgs-6.1/Linux-amd64/bin/runCA
CA noOBT
LOAD STATS
7 libInput
7 libLoaded
0 libErrors
5 libWarnings
326,236,387 frgLoaded
326236387 numRandom
326236387 numPacked
LibraryName numActiveFRG numDelFRG numMatedFRG readLength clearLength
GLOBAL 326236387 0 315518526 37451489553 37418130441
LegacyUnmatedReads 0 0 0 0 0
s_2_3kb 9107424 0 9107424 942165284 910444046
s_2_8kb 209336 0 209336 21814418 20787384
s_3 63618839 0 61696784 7343024554 7342819494
s_4 63544688 0 61255960 7291557748 7291478152
s_5 63370860 0 61084368 7271218123 7271051639
s_6 63780887 0 61685156 7359094156 7359012512
s_7 62604353 0 60479498 7222615270 7222537214
mulberry:/scratch2/dpuiu/Megachile_rotundata/Assembly/wgs-noOBT