Dpuiu articles

My articles

2010

• Draft genome sequence of the oilseed species Ricinus communis Nat Biotechnol. 2010 September; 28(9): 951–956.
• Multi-Platform Next-Generation Sequencing of the Domestic Turkey: Genome Assembly and Analysis PLoS Biol 2010 8(9): e1000475.
• Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics Science 1 October 2010:Vol. 330 no. 6000 pp. 86-88
• Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire Genome Biology 2010, 11:R73
• New Assembly, Reannotation and Analysis of the Entamoeba histolytica Genome Reveal New Genomic Features and Protein Content Information PLoS Negl Trop Dis. 2010 June; 4(6): e716

2009

• A whole-genome assembly of the domestic cow, Bos taurus Genome Biology 2009, 10:R42 doi:10.1186/gb-2009-10-4-r42
• Genome Sequence of the Wolbachia Endosymbiont of Culex quinquefasciatus JHB Journal of Bacteriology

2008

• Re-Assembly of the Genome of Francisella tularensis Subsp. holarctica OSU18 PLoS ONE
• Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads PLoS
• Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99 BMC Genomics

2007

• Genome of the Opportunistic Pathogen Streptococcus sanguinis JBacteriology

2004

• The genome of Cryptosporidium hominis Nature
• GeneX Va: VBC open source microarray database and analysis software. Biotcehniques
• Partitioning of Rearranged Ig Genes by Mutation Analysis Demonstrates D-D Fusion and V Gene Replacement in the Expressed Human Repertoire JImmunology
• CryptoDB: the Cryptosporidium genome resource NAR
• SUPERCONTIGS: A Contig Scaffolding Tool CSB

2002

• Self-Adapting Backfilling Scheduling for Parallel Systems ICPP

2001

• Intermediate Representation in Model Based Recognition Using Straight Line and Ellipsoidal Arc Primitives ICIAP

File location:

/nfshomes/dpuiu/Archives/JCVI/Documents/Personal/Career/

To read

• Evidence for symmetric chromosomal inversions around the replication origin in bacteria GenomeBiology 2000
• A simple, fast, and accurate method of phylogenomic inference GenomeBiology 2008
• The quest for orthologs: finding the corresponding gene across genomes