Xanthomonas campestris pv raphani

Article

• Title: Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

... we describe the complete genome sequences of X. campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect Arabidopsis thaliana and rice, respectively, by colonizing the mesophyll tissue.

• Authors:

 Adam Bogdanove
 Ralf Koebnik
 Hong Lu
 Ayako Furutani
 Samuel Angiuoli
 Prabhu Patil
 Marie-Anne Van Sluys
 Robert Ryan
 Damien Meyer
 Sang-Wook Han
 Gudlur Aparna
 Misha Rajaram
 Arthur Delcher
 Adam Phillippy
 Daniela Puiu
 Michael Schatz
 Martin Shumway
 Daniel Sommer
 Cole Trapnell
 Faiza Benahmed
 George Dimitrov
 Ramana Madupu
 Diana Radune
 Steven Sullivan
 Gopaljee Jha
 Hiromichi Ishihara
 Sang-Won Lee
 Alok Pandey
 Vikas Sharma
 Malinee Sriariyanun
 Boris Szurek
 Casiana Vera-Cruz
 Karin Dorman
 Pamela Ronald
 Valerie Verdier
 Max Dow
 Ramesh Sonti
 Seiji Tsuge
 Volker Brendel
 Pablo Rabinowicz
 JAN LEACH
 White Frank
 Steven Salzberg

• Journal of Bacteriology: JB05262-11: Manuscript Received

NCBI

 locus tag prefix	XCR	
 GenBank accession	CP002789	
 NCBI taxonomy	Xanthomonas campestris pv. raphani strain 756C	
 NCBI tax id	990315	http://www.ncbi.nlm.nih.gov/bioproject/990315
 NCBI project id	63187	http://www.ncbi.nlm.nih.gov/bioproject/63187
 traces 		
 trace assembly		

 locus tag prefix	XOC	
 GenBank accession	AAQN01000001	http://www.ncbi.nlm.nih.gov/nuccore/AAQN01000001
 NCBI taxonomy	Xanthomonas oryzae pv. oryzicola BLS256	http://www.ncbi.nlm.nih.gov/taxonomy/383407
 NCBI tax id	383407	http://www.ncbi.nlm.nih.gov/taxonomy/383407
 NCBI project id	16740	http://www.ncbi.nlm.nih.gov/bioproject/16740
 shotgun traces 	57645 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=ncbi_project_id=16740
 finishing traces 	919 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&s=search&m=obtain&retrieve=Search&val=SPECIES_CODE%3D%27XANTHOMONAS+ORYZAE+PV.+ORYZICOLA+BLS256%27
 total traces	58353 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&s=search&m=obtain&retrieve=Search&val=SPECIES_CODE%3D%27XANTHOMONAS+ORYZAE+PV.+ORYZICOLA%27
 trace assembly	1 contig	http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&ai=1290&m=main&s=browse

Locations

• Mike's final assembly

 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.frg
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.asm
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.scaffolds.fasta
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted//autoJoin/results/Xca-retrim.fasta
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.bnk

• Genbank submission:

 /fs/szasmg/Bacteria/Xanthomonas/Xcr/
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank