Bioterrorism: Difference between revisions

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* Francisella philomiragia subsp. philomiragia ATCC 25017 project at DOE Joint Genome Institute ; complete; in Insignia
* Francisella philomiragia subsp. philomiragia ATCC 25017 project at DOE Joint Genome Institute ; complete; in Insignia
* Francisella tularensis B-SA project at Baylor College of Medicine; progress  
* Francisella tularensis B-SA project at Baylor College of Medicine; progress  
* 2 Bacillus athracis strains in progress at BCM; data available only by request  
* 2 Bacillus athracis strains in progress at BCM; data available only by request
 
* Category  A, Bacteria       
[[Bacillus_anthracis|Bacillus anthracis]]
Anthrax
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
 
[[Clostridium_botulinum_other_strains|Clostridium botulinum]]         
Botulism
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
 
[[Francisella_tularensis|Francisella tularensis]]
Tularemia
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all][http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
 
[[Yersinia_pestis|Yersinia pestis]]
Plague
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
 
* Category  A, Virus
 
Arenaviruses(Lassa,Machupo...) 
Viral hemoragic fever
 
Bunyaviruses
Viral hemoragic fever
 
Flaviruses
Viral hemoragic fever
Filoviruses(Ebola,Marburg...)
Viral hemoragic fever
 
Variola major
Smallpox

Revision as of 15:42, 8 December 2008


 Category        Type            Organism                        Disease                        #NCBI Genome Projects assembly(complete)          
 ====================================================================================================================

 A               Bacteria        Bacillus anthracis              Anthrax                        11(3)
 A               Bacteria        Clostridium botulinum           Botulism                       11(8)
 A               Bacteria        Francisella tularensis          Tularemia                      11(7)
 A               Bacteria        Yersinia pestis                 Plague                         16(7)
 A               Virus           Arenaviruses(Lassa,Machupo...)  Viral hemoragic fever          0
 A               Virus           Bunyaviruses                    Viral hemoragic fever          0
 A               Virus           Flaviruses                      Viral hemoragic fever          0
 A               Virus           Filoviruses(Ebola,Marburg...)   Viral hemoragic fever          0
 A               Virus           Variola major                   Smallpox                       0
 
 B               Bacteria        Brucella                        Brucellosis                    8(8)
 B               Bacteria        Burkholderia mallei             Glanders                       10(4)
 B               Bacteria        Burkholderia pseudomallei       Melioidosis                    21(4)
 B               Bacteria        Campylobacter jejuni            ?                              11(5) NIAID only
 B               Bacteria        Chlamydia psittaci              Psittacosis                    1(0)
 B               Bacteria        Clostridium perfringens         Food poisoning(Epsilon toxin)  8(2)
 B               Bacteria        Coxiella burnetii               Q fever                        7(3)
 B               Bacteria        Escherichia coli O157:H7        Food poisoning                 16(2)
 B               Bacteria        Listeria monocytogenes          ?                              20(2) NIAID only
 B               Bacteria        Rickettsia prowazekii           Typhus fever                   1(1)
 B               Bacteria        Salmonella                      Salmonellosis,Typhoid fever    30(10)
 B               Bacteria        Shigella                        Shigellosis,Dysenteria         10(7) 
 B               Bacteria        Staphylococcus aureus           Food poisoning(Enterotoxin B)  17(14)
 B               Bacteria        Vibrio cholerae                 Cholera                        15(2)  
 B               Bacteria        Yersinia enterocolitica         ?                              1(1) NIAID only
 B               Plant           Ricinus communis                poisoning(Ricinus toxin)       1(0)
 B               Protozoa        Cryptosporidium parvum          Cryptosporidiosis              1(1)
 B               Virus           Alphaviruses                    Viral encephalitis             0
 
 C               Virus           Hantavirus                      Hemorrhagic fever              0   
 C               Virus           Nipah                           Viral encephalitis             0
 ====================================================================================================================

Notes:

  • Several new Clostridium botulinum strains ; E3 Alaska complete & not in Insignia
  • Francisella philomiragia subsp. philomiragia ATCC 25017 project at DOE Joint Genome Institute ; complete; in Insignia
  • Francisella tularensis B-SA project at Baylor College of Medicine; progress
  • 2 Bacillus athracis strains in progress at BCM; data available only by request
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