Bm.qc combine

454 sanger hybrid [Scaffolds] TotalScaffolds 1406 10148 10254 TotalContigsInScaffolds 1513 12659 13607 MeanContigsPerScaffold 1.08 1.25 1.33 MinContigsPerScaffold 1 1 1 MaxContigsPerScaffold 5 40 48 TotalBasesInScaffolds 1980831 82012118 84309668 MeanBasesInScaffolds 1409 8082 8222 MinBasesInScaffolds 585 904 283 MaxBasesInScaffolds 7572 2307981 1721555 N25ScaffoldBases 1753 129247 472523 N50ScaffoldBases 1289 46197 117198 N75ScaffoldBases 1109 14222 18959 ScaffoldAt1000000 1285 NA NA TotalSpanOfScaffolds 2226417 87454189 94122201 MeanSpanOfScaffolds 1584 8618 9179 MinScaffoldSpan 585 904 283 MaxScaffoldSpan 23313 2323624 1788901 IntraScaffoldGaps 107 2511 3353 2KbScaffolds 131 3701 3193 2KbScaffoldSpan 663003 78716002 84858641 MeanSequenceGapLength 2295 2167 2926 [Top5Scaffolds=contigs,size,span,avgContig,avgGap,EUID] 0 4,7572,7789,1893,72,7180000390137 40,2307981,2323624,57700,401,1328704 48,1721555,1788901,35866,1433,1555904 1 5,6479,8696,1296,554,7180000388860 24,1516999,1532321,63208,666,1328701 15,1185197,1203477,79013,1306,1555865 2 2,6083,6694,3042,611,7180000388747 23,1340524,1356064,58284,706,1328703 11,1108784,1129504,100799,2072,1555857 3 4,5906,8258,1476,784,7180000388779 15,1140592,1149533,76039,639,1328720 14,1079545,1092527,77110,999,1555669 4 4,5514,8532,1378,1006,7180000389227 25,1070426,1081655,42817,468,1328702 17,1022143,1026496,60126,272,1555876 total 19,31554,39969,1661,601 127,7376522,7443197,58083,547 105,6117224,6240905,58259,1237 [Contigs] TotalContigsInScaffolds 1513 12659 13607 TotalBasesInScaffolds 1980831 82012118 84309668 TotalVarRecords 1953 86085 145646 MeanContigLength 1309 6479 6196 MinContigLength 280 274 66 MaxContigLength 4952 565900 522243 N25ContigBases 1527 65357 101916 N50ContigBases 1257 27474 30726 N75ContigBases 1097 6100 5654 [BigContigs_greater_10000] TotalBigContigs 0 1609 1417 BigContigLength 0 57310605 58560900 MeanBigContigLength 0 35619 41327 MinBigContig 0 10014 10024 MaxBigContig 0 565900 522243 BigContigsPercentBases 0.00 69.88 69.46 [SmallContigs] TotalSmallContigs 1513 11050 12190 SmallContigLength 1980831 24701513 25748768 MeanSmallContigLength 1309 2235 2112 MinSmallContig 280 274 66 MaxSmallContig 4952 9968 9975 SmallContigsPercentBases 100.00 30.12 30.54 [DegenContigs] TotalDegenContigs 192840 8497 114780 DegenContigLength 56098824 10297846 42193843 DegenVarRecords 66751 10425 57124 MeanDegenContigLength 291 1212 368 MinDegenContig 63 65 63 MaxDegenContig 5688 82776 25405 DegenPercentBases 2832.09 12.56 50.05 [Top5Contigs=reads,bases,EUID] 0 227,4952,7180000388746 7237,565900,1321798 17214,522243,1546057 1 113,4737,7180000388714 4447,351060,1320167 18092,508032,1545415 2 327,4094,7180000388717 4699,331465,1321830 8957,400176,1545843 3 210,3799,7180000388743 3610,306648,1321845 13159,379926,1546078 4 105,3688,7180000388727 4775,301942,1321734 12954,379724,1546244 total 982,21270 24768,1857015 70376,2190101 [UniqueUnitigs] TotalUUnitigs 1534 26192 36145 MinUUnitigLength 72 64 64 MaxUUnitigLength 4155 307689 132923 MeanUUnitigLength 1301 2774 2515 SDUUnitigLength 394 6807 5214 [Surrogates] TotalSurrogates 20 5856 6785 SurrogateInstances 20 7225 8483 SurrogateLength 8484 17192360 9886209 SurrogateInstanceLength 8388 25015803 15522342 UnPlacedSurrReadLen 81891 239498624 120812859 PlacedSurrReadLen 1170 37248682 33034388 MinSurrogateLength 96 161 65 MaxSurrogateLength 1285 90056 58392 MeanSurrogateLength 424 2936 1457 SDSurrogateLength 262 6189 2509 [Mates] ReadsWithNoMate 2197998(83.93%) 117707(10.03%)2347967(60.99%) ReadsWithGoodMate 1044(0.04%) 465244(39.65%) 806560(20.95%) ReadsWithBadShortMate 158(0.01%) 1760(0.15%) 2092(0.05%) ReadsWithBadLongMate 8(0.00%) 1036(0.09%) 2488(0.06%) ReadsWithSameOrientMate 86(0.00%) 910(0.08%) 5592(0.15%) ReadsWithOuttieMate 72(0.00%) 368(0.03%) 1772(0.05%) ReadsWithBothChaffMate 27690(1.06%) 53194(4.53%) 48840(1.27%) ReadsWithChaffMate 100682(3.84%) 36650(3.12%) 104996(2.73%) ReadsWithBothDegenMate 279388(10.67%) 199770(17.03%) 213034(5.53%) ReadsWithDegenMate 11342(0.43%) 51246(4.37%) 90260(2.34%) ReadsWithBothSurrMate 0(0.00%) 416(0.04%) 110(0.00%) ReadsWithSurrogateMate 24(0.00%) 226444(19.30%) 174634(4.54%) ReadsWithDiffScafMate 348(0.01%) 18596(1.58%) 51496(1.34%) ReadsWithUnassignedMate 0(0.00%) 0(0.00%) 0(0.00%) TotalScaffoldLinks 4 116 387 MeanScaffoldLinkWeight 2.50 3.50 8.70 [Reads] TotalReadsInput 3297077 1178192 4475269 TotalUsableReads 2618840 1173341 3849841 AvgClearRange 235 791 410 ContigReads 47342(1.81%) 678087(57.79%)1657932(43.06%) BigContigReads 0(0.00%) 559113(47.65%)1407760(36.57%) SmallContigReads 47342(1.81%) 118974(10.14%) 250172(6.50%) DegenContigReads 1530785(58.45%) 109437(9.33%)1052007(27.33%) SurrogateReads 376(0.01%) 342175(29.16%) 281402(7.31%) PlacedSurrogateReads 12(0.00%) 45413(3.87%) 46384(1.20%) SingletonReads 1040349(39.73%) 89055(7.59%) 904884(23.50%) ChaffReads 1039561(39.70%) 89048(7.59%) 904272(23.49%) [Coverage] ContigsOnly 5.46 6.62 10.91 Contigs_Surrogates 5.50 9.54 12.35 Contigs_Degens_Surrogates 6.20 9.41 10.46 AllReads 310.18 11.32 18.73 [TotalBaseCounts] BasesCount NA NA NA ClearRangeLengthFRG NA NA NA ClearRangeLengthASM 614416134 927974911 1579010968 SurrogateBaseLength 83061 276747306 153847247 ContigBaseLength 10821164 542975021 920163174 DegenBaseLength 349180617 86620911 282002680 SingletonBaseLength 254332462 58880355 256032255 Contig_SurrBaseLength 10903055 782473645 1040976033 [gcContent] Content 32.70 30.11 29.99 [Unitig Consensus] NumColumnsInUnitigs 938983681 476792687 1197917290 NumGapsInUnitigs 2374725 1486629 4486947 NumRunsOfGapsInUnitigReads 37987307 20659878 90359012 [Contig Consensus] NumColumnsInUnitigs 58875009 92725198 127951717 NumGapsInUnitigs 795848 417174 1450876 NumRunsOfGapsInUnitigReads 13186973 4439224 28262805 NumColumnsInContigs 58856256 92705330 127898545 NumGapsInContigs 776491 395785 1395140 NumRunsOfGapsInContigReads 12345375 4187916 26412719 NumAAMismatches 75765 148474 294243 NumVARStringsWithFlankingGaps 8689 23928 42375