Bm.qc combine

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                                       454        sanger         hybrid
 [Scaffolds]              
 TotalScaffolds                      1406          10148          10254
 TotalContigsInScaffolds             1513          12659          13607
 MeanContigsPerScaffold              1.08           1.25           1.33
 MinContigsPerScaffold                  1              1              1
 MaxContigsPerScaffold                  5             40             48
 TotalBasesInScaffolds            1980831       82012118       84309668
 MeanBasesInScaffolds                1409           8082           8222
 MinBasesInScaffolds                  585            904            283
 MaxBasesInScaffolds                 7572        2307981        1721555
 N25ScaffoldBases                    1753         129247         472523
 N50ScaffoldBases                    1289          46197         117198
 N75ScaffoldBases                    1109          14222          18959
 ScaffoldAt1000000                   1285             NA             NA
 TotalSpanOfScaffolds             2226417       87454189       94122201
 MeanSpanOfScaffolds                 1584           8618           9179
 MinScaffoldSpan                      585            904            283
 MaxScaffoldSpan                    23313        2323624        1788901
 IntraScaffoldGaps                    107           2511           3353
 2KbScaffolds                         131           3701           3193
 2KbScaffoldSpan                   663003       78716002       84858641
 MeanSequenceGapLength               2295           2167           2926
 
 [Top5Scaffolds=contigs,size,span,avgContig,avgGap,EUID]
 0          4,7572,7789,1893,72,7180000390137   40,2307981,2323624,57700,401,1328704 48,1721555,1788901,35866,1433,1555904
 1          5,6479,8696,1296,554,7180000388860  24,1516999,1532321,63208,666,1328701 15,1185197,1203477,79013,1306,1555865
 2          2,6083,6694,3042,611,7180000388747  23,1340524,1356064,58284,706,1328703 11,1108784,1129504,100799,2072,1555857
 3          4,5906,8258,1476,784,7180000388779  15,1140592,1149533,76039,639,1328720 14,1079545,1092527,77110,999,1555669
 4          4,5514,8532,1378,1006,7180000389227 25,1070426,1081655,42817,468,1328702 17,1022143,1026496,60126,272,1555876
 total      19,31554,39969,1661,601             127,7376522,7443197,58083,547        105,6117224,6240905,58259,1237
 
 [Contigs]                
 TotalContigsInScaffolds             1513          12659          13607
 TotalBasesInScaffolds            1980831       82012118       84309668
 TotalVarRecords                     1953          86085         145646
 MeanContigLength                    1309           6479           6196
 MinContigLength                      280            274             66
 MaxContigLength                     4952         565900         522243
 N25ContigBases                      1527          65357         101916
 N50ContigBases                      1257          27474          30726
 N75ContigBases                      1097           6100           5654
 
 [BigContigs_greater_10000]
 TotalBigContigs                        0           1609           1417
 BigContigLength                        0       57310605       58560900
 MeanBigContigLength                    0          35619          41327
 MinBigContig                           0          10014          10024
 MaxBigContig                           0         565900         522243
 BigContigsPercentBases              0.00          69.88          69.46
 
 [SmallContigs]           
 TotalSmallContigs                   1513          11050          12190
 SmallContigLength                1980831       24701513       25748768
 MeanSmallContigLength               1309           2235           2112
 MinSmallContig                       280            274             66
 MaxSmallContig                      4952           9968           9975
 SmallContigsPercentBases          100.00          30.12          30.54
 
 [DegenContigs]           
 TotalDegenContigs                 192840           8497         114780
 DegenContigLength               56098824       10297846       42193843
 DegenVarRecords                    66751          10425          57124
 MeanDegenContigLength                291           1212            368
 MinDegenContig                        63             65             63
 MaxDegenContig                      5688          82776          25405
 DegenPercentBases                2832.09          12.56          50.05
 
 [Top5Contigs=reads,bases,EUID]
 0          227,4952,7180000388746    7237,565900,1321798       17214,522243,1546057     
 1          113,4737,7180000388714    4447,351060,1320167       18092,508032,1545415     
 2          327,4094,7180000388717    4699,331465,1321830       8957,400176,1545843      
 3          210,3799,7180000388743    3610,306648,1321845       13159,379926,1546078     
 4          105,3688,7180000388727    4775,301942,1321734       12954,379724,1546244     
 total      982,21270                 24768,1857015             70376,2190101            
 
 [UniqueUnitigs]          
 TotalUUnitigs                       1534          26192          36145
 MinUUnitigLength                      72             64             64
 MaxUUnitigLength                    4155         307689         132923
 MeanUUnitigLength                   1301           2774           2515
 SDUUnitigLength                      394           6807           5214
 
 [Surrogates]             
 TotalSurrogates                       20           5856           6785
 SurrogateInstances                    20           7225           8483
 SurrogateLength                     8484       17192360        9886209
 SurrogateInstanceLength             8388       25015803       15522342
 UnPlacedSurrReadLen                81891      239498624      120812859
 PlacedSurrReadLen                   1170       37248682       33034388
 MinSurrogateLength                    96            161             65
 MaxSurrogateLength                  1285          90056          58392
 MeanSurrogateLength                  424           2936           1457
 SDSurrogateLength                    262           6189           2509
 
 [Mates]                  
 ReadsWithNoMate          2197998(83.93%) 117707(10.03%)2347967(60.99%)
 ReadsWithGoodMate            1044(0.04%) 465244(39.65%) 806560(20.95%)
 ReadsWithBadShortMate         158(0.01%)    1760(0.15%)    2092(0.05%)
 ReadsWithBadLongMate            8(0.00%)    1036(0.09%)    2488(0.06%)
 ReadsWithSameOrientMate        86(0.00%)     910(0.08%)    5592(0.15%)
 ReadsWithOuttieMate            72(0.00%)     368(0.03%)    1772(0.05%)
 ReadsWithBothChaffMate      27690(1.06%)   53194(4.53%)   48840(1.27%)
 ReadsWithChaffMate         100682(3.84%)   36650(3.12%)  104996(2.73%)
 ReadsWithBothDegenMate    279388(10.67%) 199770(17.03%)  213034(5.53%)
 ReadsWithDegenMate          11342(0.43%)   51246(4.37%)   90260(2.34%)
 ReadsWithBothSurrMate           0(0.00%)     416(0.04%)     110(0.00%)
 ReadsWithSurrogateMate         24(0.00%) 226444(19.30%)  174634(4.54%)
 ReadsWithDiffScafMate         348(0.01%)   18596(1.58%)   51496(1.34%)
 ReadsWithUnassignedMate         0(0.00%)       0(0.00%)       0(0.00%)
 TotalScaffoldLinks                     4            116            387
 MeanScaffoldLinkWeight              2.50           3.50           8.70
 
 [Reads]                  
 TotalReadsInput                  3297077        1178192        4475269
 TotalUsableReads                 2618840        1173341        3849841
 TotalUnusableReads                678237           4851         625428

 AvgClearRange                        235            791            410
 ContigReads                 47342(1.81%) 678087(57.79%)1657932(43.06%)
 BigContigReads                  0(0.00%) 559113(47.65%)1407760(36.57%)
 SmallContigReads            47342(1.81%) 118974(10.14%)  250172(6.50%)
 DegenContigReads         1530785(58.45%)  109437(9.33%)1052007(27.33%)
 SurrogateReads                376(0.01%) 342175(29.16%)  281402(7.31%)
 PlacedSurrogateReads           12(0.00%)   45413(3.87%)   46384(1.20%)
 SingletonReads           1040349(39.73%)   89055(7.59%) 904884(23.50%)
 ChaffReads               1039561(39.70%)   89048(7.59%) 904272(23.49%)
 
 [Coverage]               
 ContigsOnly                         5.46           6.62          10.91
 Contigs_Surrogates                  5.50           9.54          12.35
 Contigs_Degens_Surrogates           6.20           9.41          10.46
 AllReads                          310.18          11.32          18.73
 
 [TotalBaseCounts]        
 BasesCount                            NA             NA             NA
 ClearRangeLengthFRG                   NA             NA             NA
 ClearRangeLengthASM            614416134      927974911     1579010968
 SurrogateBaseLength                83061      276747306      153847247
 ContigBaseLength                10821164      542975021      920163174
 DegenBaseLength                349180617       86620911      282002680
 SingletonBaseLength            254332462       58880355      256032255
 Contig_SurrBaseLength           10903055      782473645     1040976033
 
 [gcContent]              
 Content                            32.70          30.11          29.99
 
 [Unitig Consensus]       
 NumColumnsInUnitigs            938983681      476792687     1197917290
 NumGapsInUnitigs                 2374725        1486629        4486947
 NumRunsOfGapsInUnitigReads      37987307       20659878       90359012
 
 [Contig Consensus]       
 NumColumnsInUnitigs             58875009       92725198      127951717
 NumGapsInUnitigs                  795848         417174        1450876
 NumRunsOfGapsInUnitigReads      13186973        4439224       28262805
 NumColumnsInContigs             58856256       92705330      127898545
 NumGapsInContigs                  776491         395785        1395140
 NumRunsOfGapsInContigReads      12345375        4187916       26412719
 NumAAMismatches                    75765         148474         294243
 NumVARStringsWithFlankingGaps       8689          23928          42375