Bos taurus redo: Difference between revisions

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   37829394        total          total                                                                          # TA query_tracedb SPECIES_CODE = "BOS TAURUS" => 37,788,710  
   37829394        total          total                                                                          # TA query_tracedb SPECIES_CODE = "BOS TAURUS" => 37,788,710  


   COUNT        CENTER_NAME    TRACE_TYPE_CODE
   COUNT        CENTER_NAME    TRACE_TYPE_CODE       #LIBS(all)    #LIBS(10K+ reads)
   24863599      BCM            WGS
   24863599      BCM            WGS                   89            31
   10748529      BCM            SHOTGUN
   10748529      BCM            SHOTGUN               10            10
   737900        NISC            SHOTGUN
   737900        NISC            SHOTGUN               1              1
   527017        BCCAGSC        EST
   527017        BCCAGSC        EST
   207204        MARC            EST
   207204        MARC            EST
Line 37: Line 37:
   25454        BARC            CLONEEND
   25454        BARC            CLONEEND
   18623        SC              EST
   18623        SC              EST
   16892        BCM            CLONEEND
   16892        BCM            CLONEEND               4              3
   16787        CENARGEN        CLONEEND
   16787        CENARGEN        CLONEEND
   15150        UOKNOR          SHOTGUN
   15150        UOKNOR          SHOTGUN

Revision as of 20:10, 22 December 2008

NCBI

 COUNT           CENTER_NAME     
 35629020        BCM             Baylor College of Medicine
 737900          NISC            NIH Intramural Sequencing Center
 652614          BCCAGSC         British Columbia Cancer Agency Genome Sciences Centre                           # TA query_tracedb CENTER_NAME = "BCCAGSC" => 652,510 
 378871          MARC            USDA, ARS, US Meat Animal Research Center
 114753          UIUC            University of Illinois at Urbana-Champaign                                      # TA query_tracedb CENTER_NAME = "UIUC" => 106,368
 107367          BARC            USDA, ARS, Beltsville Agricultural Research Center
 65171           TIGR            The Institute for Genome Research
 53556           GSC             Genoscope
 43033           CENARGEN        Embrapa Genetic Resources and Biotechnology
 18623           SC              The Sanger Center
 15301           UOKNOR          University of Oklahoma Norman Campus, Advanced Center for Genome Technology
 10651           TIGR_JCVIJTC    The Institute for Genomic Research, Traces generated at JCVIJTC                 # TA query_tracedb CENTER_NAME="JCVI"
 2485            UIACBCB         University of Iowa Center for Bioinformatics and Computation Biology (UIACBCB)
 49              WUGSC           Washington University, Genome Sequencing Center                                 # TA query_tracedb CENTER_NAME = "WUGSC" => 9
 37829394        total           total                                                                           # TA query_tracedb SPECIES_CODE = "BOS TAURUS" => 37,788,710 
 COUNT         CENTER_NAME     TRACE_TYPE_CODE        #LIBS(all)     #LIBS(10K+ reads)
 24863599      BCM             WGS                    89             31
 10748529      BCM             SHOTGUN                10             10
 737900        NISC            SHOTGUN                1              1
 527017        BCCAGSC         EST
 207204        MARC            EST
 171667        MARC            PCR
 125597        BCCAGSC         CLONEEND
 114753        UIUC            CLONEEND
 81913         BARC            EST
 65171         TIGR            CLONEEND
 53556         GSC             CLONEEND
 26246         CENARGEN        WGS
 25454         BARC            CLONEEND
 18623         SC              EST
 16892         BCM             CLONEEND               4              3
 16787         CENARGEN        CLONEEND
 15150         UOKNOR          SHOTGUN
 10651         TIGR_JCVIJTC    CLONEEND
 2485          UIACBCB         EST
 151           UOKNOR          FINISHING
 49            WUGSC           CLONEEND
 COUNT           CENTER_NAME     STRATEGY        TRACE_TYPE_CODE
 12545304        BCM             .               WGS
 11425910        BCM             WGA             WGS
 5223683         BCM             CLONE           SHOTGUN
 4479883         BCM             POOLCLONE       SHOTGUN
 1044963         BCM             .               SHOTGUN
 892385          BCM             SNP             WGS
 737900          NISC            CLONE           SHOTGUN
 527017          BCCAGSC         EST             EST
 145820          MARC            EST             EST
 125597          BCCAGSC         CLONEEND        CLONEEND
 117958          MARC            COMPARATIVE     PCR
 114753          UIUC            CLONEEND        CLONEEND
 81913           BARC            EST             EST
 65171           TIGR            CLONEEND        CLONEEND
 61384           MARC            CLONE           EST
 53709           MARC            Re-Sequencing   PCR
 53556           GSC             CLONEEND        CLONEEND
 26246           CENARGEN        .               WGS
 25454           BARC            .               CLONEEND
 18623           SC              EST             EST
 16892           BCM             CLONEEND        CLONEEND
 16787           CENARGEN        CLONEEND        CLONEEND
 12195           UOKNOR          .               SHOTGUN
 10651           TIGR_JCVIJTC    CLONEEND        CLONEEND
 2955            UOKNOR          CLONE           SHOTGUN
 2485            UIACBCB         .               EST
 151             UOKNOR          .               FINISHING
 49              WUGSC           CLONEEND        CLONEEND

Data

Local Files:

 /fs/szasmg3/bos_taurus/data/