Brugia malayi: Difference between revisions
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= Genome = | = Genome = | ||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10729 NCBI] | * [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10729 NCBI Genome project] | ||
* [http://www.tigr.org/tdb/e2k1/bma1/intro.shtml TIGR Genome project] (TRS strain) | |||
Libraries: | |||
* 2K : bulk of the sequence @TIGR | |||
* 15-20 K @TIGR | |||
* 8,000 BAC clones @Children's Hospital Oakland Research Institute. | |||
* 6 chromosomes: 1-5, XY | * 6 chromosomes: 1-5, XY | ||
* ~ 90M, 30% GC, 32% coding, 15% repeats | * ~ 90M, 30% GC, 32% coding, 15% repeats | ||
Revision as of 16:39, 18 August 2008
Articles
Genome
- NCBI Genome project
- TIGR Genome project (TRS strain)
Libraries: * 2K : bulk of the sequence @TIGR * 15-20 K @TIGR * 8,000 BAC clones @Children's Hospital Oakland Research Institute.
- 6 chromosomes: 1-5, XY
- ~ 90M, 30% GC, 32% coding, 15% repeats
- 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K)
- mitochondrion finished: 13,657 bp; 24% GC
- Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel complete: 1,080,084 bp; 34%GC (New England Biolabs)
- Wolbachia endosymbiont strain wMel progress (TIGR)