Brugia malayi: Difference between revisions
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* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=630 Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel] complete: 1,080,084 bp; 34%GC (New England Biolabs) | * [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=630 Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel] complete: 1,080,084 bp; 34%GC (New England Biolabs) | ||
* Wolbachia endosymbiont strain wMel progress (TIGR) | * Wolbachia endosymbiont strain wMel progress (TIGR) | ||
* NCBI TA Bm traces (08/18/2008): | |||
* all: 1,260,215 | |||
* TRACE_TYPE_CODE | |||
* WGS: 1,258,277 | |||
* TRANSPOSON: 1,437 | |||
* PRIMER_WALK 501 | |||
Revision as of 16:50, 18 August 2008
Articles
Genome
- NCBI Genome project
- TIGR Genome project (TRS strain)
Libraries: * 2K : bulk of the sequence @TIGR * 15-20 K @TIGR * 8,000 BAC clones @Children's Hospital Oakland Research Institute.
- 6 chromosomes: 1-5, XY
- ~ 90M, 30% GC, 32% coding, 15% repeats
- 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K)
- mitochondrion finished: 13,657 bp; 24% GC
- Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel complete: 1,080,084 bp; 34%GC (New England Biolabs)
- Wolbachia endosymbiont strain wMel progress (TIGR)
- NCBI TA Bm traces (08/18/2008):
* all: 1,260,215
* TRACE_TYPE_CODE
* WGS: 1,258,277
* TRANSPOSON: 1,437
* PRIMER_WALK 501