Brugia malayi: Difference between revisions
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= Articles = | = Articles = | ||
[http://www.sciencemag.org/cgi/content/full/317/5845/1756 Science 2007] | [http://www.sciencemag.org/cgi/content/full/317/5845/1756 Science 2007] | ||
= Genome = | = Genome = | ||
* 6 chromosomes: 1-5, XY | * 6 chromosomes: 1-5, XY | ||
* ~ 90M, 30% GC, 32% coding, 15% repeats | * ~ 90M, 30% GC, 32% coding, 15% repeats | ||
= Genome Projects = | = Genome Projects = | ||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10729 NCBI Genome project] | * [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10729 NCBI Genome project] | ||
* [http://www.tigr.org/tdb/e2k1/bma1/intro.shtml TIGR Genome project] (TRS strain) | * [http://www.tigr.org/tdb/e2k1/bma1/intro.shtml TIGR Genome project] (TRS strain) | ||
== Traces == | |||
Libraries: | Libraries: | ||
* 2K : bulk of the sequence @TIGR | * 2K : bulk of the sequence @TIGR | ||
| Line 15: | Line 21: | ||
* 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K) | * 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K) | ||
* [ftp://ftp.ncbi.nih.gov/pub/TraceDB/brugia_malayi/ NCBI TA FTP] | * [ftp://ftp.ncbi.nih.gov/pub/TraceDB/brugia_malayi/ NCBI TA FTP] | ||
| Line 31: | Line 33: | ||
* JCVI 403,591 | * JCVI 403,591 | ||
* SEQ_LIB_ID: | * SEQ_LIB_ID: | ||
= Other sequences = | |||
== Mitochondrion == | |||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=16713 mitochondrion] finished: 13,657 bp; 24% GC | |||
== Symbiont == | |||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=630 Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel] complete: 1,080,084 bp; 34%GC (New England Biolabs) | |||
* Wolbachia endosymbiont strain wMel progress (TIGR) | |||
Revision as of 19:39, 18 August 2008
Articles
Genome
- 6 chromosomes: 1-5, XY
- ~ 90M, 30% GC, 32% coding, 15% repeats
Genome Projects
- NCBI Genome project
- TIGR Genome project (TRS strain)
Traces
Libraries: * 2K : bulk of the sequence @TIGR * 15-20 K @TIGR * 8,000 BAC clones @Children's Hospital Oakland Research Institute.
- 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K)
Summary:
* all: 1,260,215
* TRACE_TYPE_CODE
* WGS: 1,258,277
* TRANSPOSON: 1,437
* PRIMER_WALK 501
* CENTER NAME
* TIGR: 856,624
* JCVI 403,591
* SEQ_LIB_ID:
Other sequences
Mitochondrion
- mitochondrion finished: 13,657 bp; 24% GC
Symbiont
- Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel complete: 1,080,084 bp; 34%GC (New England Biolabs)
- Wolbachia endosymbiont strain wMel progress (TIGR)