Brugia malayi: Difference between revisions

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     * TIGR:        856,624
     * TIGR:        856,624
     * JCVI          403,591
     * JCVI          403,591
  * NO BACS !!!; max INSERT_SIZE=23K


== Assemblies ==
== Assemblies ==

Revision as of 19:59, 18 August 2008

Articles

Genome Info

  • 6 chromosomes: 1-5, XY
  • ~ 90M, 30% GC, 32% coding, 15% repeats

Other sequences

Genome Project

 * 26,879 good ctgs
 * 2,927 contaminants (Example: AAQA01001321 : mouse 99%id hits)

Traces

 Libraries:
   * 2K : bulk of the sequence @TIGR
   * 15-20 K @TIGR
   * 8,000 BAC clones @Children's Hospital Oakland Research Institute. 

Trace summary:

  * all:          1,260,215 
  * TRACE_TYPE_CODE 
    * WGS:        1,258,277 
    * TRANSPOSON:     1,437 
    * PRIMER_WALK       501
  * CENTER NAME
    * TIGR:         856,624
    * JCVI          403,591
  * NO BACS !!!; max INSERT_SIZE=23K

Assemblies

TIGR

  • 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K)
  • "scaffolds totaling ~71 Mb of data with a further ~17.5 Mb of contigs not integrated into any scaffold (orphan contigs)" (Science 2007)

CBCB