Cbcb:Pop-Lab:Bo-Report:metagenomicsData: Difference between revisions

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== Metagenomic Date Sets ==
== Metagenomic Date Sets ==
 
The following table shows some metagenomic datasets that are available locally. All the DNA sequences are downloaded directly from NCBI TraceArchive or Short Read Archive without any preprocessing.
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!  More Information
!  More Information
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|  row 1, cell 1
|  UBA Acid Mine Drainage Biofilm Metagenome
|  row 1, cell 2
|  /fs/szdata/metagenomes/reads/acidMine/acidMineUba.fasta
|  row 1, cell 3
|  [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18537 http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18537]
|-
|-
|  row 2, cell 1
|  5-Way (CG) Acid Mine Drainage Biofilm Metagenome
|  row 2, cell 2
|  /fs/szdata/metagenomes/reads/acidMine/acidMineCg.fasta
|  row 2, cell 3
|  [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13696 http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13696]
|-
|  Antarctica Aquatic Microbial Metagenome
|  /fs/szdata/metagenomes/reads/antarctica/antarctica.fasta
|  [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=33179 http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=33179]
|-
|  Metagenomic Water Samples from Rita Colwell
|  /fs/szdata/metagenomes/reads/freshwaterUMIGS/freshwaterUMIGS1.fasta /fs/szdata/metagenomes/reads/freshwaterUMIGS/freshwaterUMIGS2.fasta
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Revision as of 15:05, 31 August 2009

Metagenomic Date Sets

The following table shows some metagenomic datasets that are available locally. All the DNA sequences are downloaded directly from NCBI TraceArchive or Short Read Archive without any preprocessing.

Metagenomics Project Data Location More Information
UBA Acid Mine Drainage Biofilm Metagenome /fs/szdata/metagenomes/reads/acidMine/acidMineUba.fasta http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18537
5-Way (CG) Acid Mine Drainage Biofilm Metagenome /fs/szdata/metagenomes/reads/acidMine/acidMineCg.fasta http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13696
Antarctica Aquatic Microbial Metagenome /fs/szdata/metagenomes/reads/antarctica/antarctica.fasta http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=33179
Metagenomic Water Samples from Rita Colwell /fs/szdata/metagenomes/reads/freshwaterUMIGS/freshwaterUMIGS1.fasta /fs/szdata/metagenomes/reads/freshwaterUMIGS/freshwaterUMIGS2.fasta
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