Cbcb:Pop-Lab:Dan-Report: Difference between revisions

Revision as of 16:56, 23 February 2009

Did a read analysis on EST sequences from soft corals. The analysis followed the methods from the paper Metagenomics: Read length matters.

Homology detection by blasting(blastx) EST reads against NR database
Use CDD Search to find conserved domains in detected proteins
Blast proteins against COG database to map proteins to COGs and functional groups

 Finishing the development of Google Gears version of the viewer.  Developed client side/javascript support of GFF relational database

 Transitioned RunCmd software packaged to Condor version 7. 
 Worked with IT to upgrade grid to latest Redhat 64-bit OS.

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 == Feb 23, 2009 ==
-*'''EST Read Annotation of the Coral Reef''' [http://aem.asm.org/cgi/content/abstract/AEM.02181-07v1 Metagenomics: Read length matters]
+*'''EST Read Annotation of the Coral Reef'''
-*'''Diva: Comparative analysis tool''' (more will come)
+Did a read analysis on EST sequences from soft corals.
-*'''Short Read Assembly: Minimus-SR''' (more will come)
+The analysis followed the methods from the paper [http://aem.asm.org/cgi/content/abstract/AEM.02181-07v1 Metagenomics: Read length matters].
+==Short description of the method==
+* Homology detection by blasting(blastx) EST reads against NR database
+* Use CDD Search to find conserved domains in detected proteins
+* Blast proteins against COG database to map proteins to COGs and functional groups
+*'''Diva: Comparative analysis tool'''
+  Finishing the development of Google Gears version of the viewer.  Developed client side/javascript support of GFF relational database
+*'''Grid Upgrade'''
+  Transitioned RunCmd software packaged to Condor version 7.
+  Worked with IT to upgrade grid to latest Redhat 64-bit OS.