Cbcb:Pop-Lab:Ted-Report: Difference between revisions

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(Figured out how to make linked references)
(Added link to VisANT page where I'll upload my summary of it's features)
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== May 15, 2009 ==
== May 15, 2009 ==
* Read VisANT paper and user manual[http://visant.bu.edu/]. Determined VisANT will work for manual metabolic pathway analysis of even large scale data sets and can be automated by running in "Batch Mode". <br>
* Read [[VisANT]] paper and user manual[http://visant.bu.edu/]. Determined VisANT will work for manual metabolic pathway analysis of even large scale data sets and can be automated by running in "Batch Mode". <br>
* Need to read about FastHMM[http://www.microbesonline.org/fasthmm/]
* Need to read about FastHMM[http://www.microbesonline.org/fasthmm/]
* Still need to make "Welcome Wiki" for n00bs (read: new members)
* Still need to make "Welcome Wiki" for n00bs (read: new members)

Revision as of 19:34, 15 May 2009

Summer 2009 Goals

  • Research traditional approaches taken to gene-level analysis of metagenomic data
  • Critically evaluate the traditional approaches in general and in the context of current Pop Lab projects
  • Identify portions of the analysis that can be automated
  • Develop scalable tools to do the automated analysis

May 15, 2009

  • Read VisANT paper and user manual[1]. Determined VisANT will work for manual metabolic pathway analysis of even large scale data sets and can be automated by running in "Batch Mode".
  • Need to read about FastHMM[2]
  • Still need to make "Welcome Wiki" for n00bs (read: new members)