Difference between revisions of "Clostridium botulinum"

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* [ftp://ftp.sanger.ac.uk/pub/pathogens/cb/CB_shotgun.dbs Shorgun Reads]
 
* [ftp://ftp.sanger.ac.uk/pub/pathogens/cb/CB_shotgun.dbs Shorgun Reads]
 
   63115 Sanger reads
 
   63115 Sanger reads
   no quality, mate pairing or trimming info available
+
   no quality       : default 20
   mate pairing can be implied (.p1c, .q1c => 27,331 mates)
+
   no mate pairing : can be inferred from names (.p1c, .q1c => 27,331 mates)
 +
  no trimming info : almost all reads have "CONTAIN
 +
 
  
 
NCBI : reads have not been submitted to TA
 
NCBI : reads have not been submitted to TA

Revision as of 01:39, 9 August 2007

Data sources

Sanger:

 Hall strain A (ATCC 3502)
 chromosome: 3886916 bp 28.24 GC%
 plasmid:      16344 bp 26.80 GC%
 63115 Sanger reads
 no quality       : default 20 
 no mate pairing  : can be inferred from names (.p1c, .q1c => 27,331 mates)
 no trimming info : almost all reads have "CONTAIN


NCBI : reads have not been submitted to TA