Difference between revisions of "Clostridium perfringens"

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(Data sources)
(Data sources)
Line 24: Line 24:
 
File locations:
 
File locations:
 
   /fs/szasmg2/Bacteria/C_perfringens
 
   /fs/szasmg2/Bacteria/C_perfringens
 +
 +
CBCB assemblies:
 +
 +
  STRAIN  ATCC_13124 B_str__ATCC_362 CPE_str__F4969 C_str__JGS1495 E_str__JGS1987 SM101  str__nctc8239
 +
  placed  37        64              60            53            78            20      48
 +
  degen.  69        65              4              39            15            120    2
 +
  total  106        129            64            92            83            140    50

Revision as of 16:25, 10 October 2007

Data sources

NCBI:

Strains:

Strains:

 1. A: not sequenced 
 2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC
 3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
 4. C str. JGS1495: JCVI, 40K reads, 84 contigs
 5. CPE str. F4969: JCVI, 37K reads, 74 contig
 6. D: not sequenced 
 7. E str. JGS1987: JCVI, 38K reads, 101 contigs
 8. NCTC 8239: JCVI, 38K reads, 55 contigs
 9. SM101: JCVI+TIGR, 43K reads, 3 contigs (chromosome+2 plasmids) (finished)
10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished); 
    password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/

File locations:

 /fs/szasmg2/Bacteria/C_perfringens

CBCB assemblies:

 STRAIN  ATCC_13124 B_str__ATCC_362 CPE_str__F4969 C_str__JGS1495 E_str__JGS1987 SM101   str__nctc8239
 placed  37         64              60             53             78             20      48
 degen.  69         65              4              39             15             120     2
 total   106        129             64             92             83             140     50