Difference between revisions of "Clostridium perfringens"

From Cbcb
Jump to: navigation, search
(Data sources)
Line 26: Line 26:
  
 
CBCB CA3 assemblies:
 
CBCB CA3 assemblies:
                    Placed  Deg  Total
+
                    Placed  Deg  Total
1. A
+
  1. A
2. ATCC_13124        37  69  106       
+
  2. ATCC_13124        37  69  106       
3. B_str__ATCC_362    64  65  129
+
  3. B_str__ATCC_362    64  65  129
4. C_str__JGS1495    53  39    92  
+
  4. C_str__JGS1495    53  39    92  
5. CPE_str__F4969    60    4    64    better
+
  5. CPE_str__F4969    60    4    64    better
6. D
+
  6. D
7. E_str__JGS1987    78  15    83    better
+
  7. E_str__JGS1987    78  15    83    better
8. str__nctc8239      48    2    50    better
+
  8. str__nctc8239      48    2    50    better
9. SM101              29  120  140
+
  9. SM101              29  120  140
 +
10. 13

Revision as of 15:05, 16 October 2007

Data sources

NCBI:

Strains:

Strains:

 1. A: not sequenced 
 2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC ; ??? what about plasmids
 3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
 4. C str. JGS1495: JCVI, 40K reads, 84 contigs
 5. CPE str. F4969: JCVI, 37K reads, 74 contig
 6. D: not sequenced 
 7. E str. JGS1987: JCVI, 38K reads, 101 contigs
 8. NCTC 8239: JCVI, 38K reads, 55 contigs
 9. SM101: JCVI+TIGR, 43K reads, 3 contigs (chromosome+2 plasmids) (finished)
10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished); 
    password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/

File locations:

 /fs/szasmg2/Bacteria/C_perfringens

CBCB CA3 assemblies:

                    Placed  Deg  Total
 1. A
 2. ATCC_13124         37   69   106      
 3. B_str__ATCC_362    64   65   129
 4. C_str__JGS1495     53   39    92 
 5. CPE_str__F4969     60    4    64     better
 6. D
 7. E_str__JGS1987     78   15    83     better
 8. str__nctc8239      48    2    50     better
 9. SM101              29  120   140
10. 13