Difference between revisions of "Clostridium perfringens"

From Cbcb
Jump to: navigation, search
(Data sources)
(Data sources)
Line 25: Line 25:
 
   /fs/szasmg2/Bacteria/C_perfringens
 
   /fs/szasmg2/Bacteria/C_perfringens
  
CBCB assemblies:
+
CBCB CA3 assemblies:
 
+
                    Placed  Deg  Total
   STRAIN ATCC_13124 B_str__ATCC_362 CPE_str__F4969 C_str__JGS1495 E_str__JGS1987 SM101   str__nctc8239
+
1. A
  placed 37        64             60            53            78             20     48
+
2. ATCC_13124        37   69  106     
  degen69        65              4              39            15            120     2
+
  3. B_str__ATCC_362   64  65  129
  total   106        129            64            92            83            140     50
+
4. C_str__JGS1495     53   39    92
 +
  5. CPE_str__F4969    60    4    64     better
 +
6. D
 +
7. E_str__JGS1987    78   15    83    better
 +
8. str__nctc8239     48   2    50    better
 +
9. SM101              29 120  140

Revision as of 16:32, 10 October 2007

Data sources

NCBI:

Strains:

Strains:

 1. A: not sequenced 
 2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC
 3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
 4. C str. JGS1495: JCVI, 40K reads, 84 contigs
 5. CPE str. F4969: JCVI, 37K reads, 74 contig
 6. D: not sequenced 
 7. E str. JGS1987: JCVI, 38K reads, 101 contigs
 8. NCTC 8239: JCVI, 38K reads, 55 contigs
 9. SM101: JCVI+TIGR, 43K reads, 3 contigs (chromosome+2 plasmids) (finished)
10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished); 
    password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/

File locations:

 /fs/szasmg2/Bacteria/C_perfringens

CBCB CA3 assemblies:

                   Placed  Deg  Total
1. A
2. ATCC_13124         37   69   106      
3. B_str__ATCC_362    64   65   129
4. C_str__JGS1495     53   39    92 
5. CPE_str__F4969     60    4    64     better
6. D
7. E_str__JGS1987     78   15    83     better
8. str__nctc8239      48    2    50     better
9. SM101              29  120   140