Difference between revisions of "Clostridium perfringens"

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(Data sources)
(Data sources)
Line 11: Line 11:
 
Strains:
 
Strains:
 
   1. A: not sequenced  
 
   1. A: not sequenced  
   2. ATCC 13124: JCVI; 54K reads, 1 contig (finished)
+
   2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC
 
   3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
 
   3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
 
   4. C str. JGS1495: JCVI, 40K reads, 84 contigs
 
   4. C str. JGS1495: JCVI, 40K reads, 84 contigs
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  10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished);  
 
  10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished);  
 
     password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/
 
     password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/
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 +
File locations:
 +
  /fs/szasmg2/Bacteria/C_perfringens

Revision as of 15:30, 10 October 2007

Data sources

NCBI:

Strains:

Strains:

 1. A: not sequenced 
 2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC
 3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
 4. C str. JGS1495: JCVI, 40K reads, 84 contigs
 5. CPE str. F4969: JCVI, 37K reads, 74 contig
 6. D: not sequenced 
 7. E str. JGS1987: JCVI, 38K reads, 101 contigs
 8. NCTC 8239: JCVI, 38K reads, 55 contigs
 9. SM101: JCVI+TIGR, 43K reads, 3 contigs (chromosome+2 plasmids) (finished)
10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished); 
    password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/

File locations:

 /fs/szasmg2/Bacteria/C_perfringens