Data formats

Anc ???

• Example:

 #ref   qry            ref_len    qry_len  ref_start  ref_end    qry_start  qry_end  ref_snp  qry_snp  merge_count  qry_dir  ref_intercept
 1      7180002077591  200994015  85878    19836      20318      78868      79351    58       58       1            1        -0.05
 1      7180002077591  200994015  85878    27827      83785      67617      1127     23332    34016    14           -1       0.09
 1      7180002077394  200994015  6640     84737      93563      6628       30       4229     2614     5            -1       0.09

GFF

• GFF3
• GFF3
• GVF Genome variation format

Posmap

• 0-bases
• Example:

 #qry            ref             ref_start  ref_end    qry_dir
 7180001689070   7180002030581   0          1756       f
 7180002006045   7180002030582   0          1771       f
 7180001780952   7180002030582   2324       3879       r

Delta

• Example:

 #>ref qry ref_len qry_len
 #ref_start ref_end  qry_start qry_end ref_snps  qry_snps

 >Z 7180002076836 74602320 1640
 71525049 71526705 1640 2 192 192 0
 ...