Dpuiu cat: Difference between revisions

From Cbcb
Jump to navigation Jump to search
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
= Data =
= Data =
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/cat/ NCBI Cat Genome Resources]
* [http://www.ncbi.nlm.nih.gov/projects/genome/guide/cat/ NCBI Cat Genome Resources]
* [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=SPECIES_CODE%3D%27FELIS+CATUS] TA Traces
* [http://www.ncbi.nlm.nih.gov/bioproject?term=Felis%20catus%5Borganism%5D NCBI Cat Genome Projects]
* [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=SPECIES_CODE%3D%27FELIS+CATUS%27+AND+CENTER_NAME%3D%27WUGSC%27] WUGSC TA Traces


* [ftp://ftp.ncbi.nih.gov/pub/TraceDB/felis_catus/ NCBI Traces] TA Traces
* [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=SPECIES_CODE%3D%27FELIS+CATUS%27 TA Traces] ~ 10Gbp (~800bp/read)
   Centers:
* [ftp://ftp.ncbi.nih.gov/pub/TraceDB/felis_catus/ TA Traces ftp]
   #Query: SPECIES_CODE='FELIS CATUS' AND CENTER_NAME='ABC' AND CENTER_NAME!='NISC' AND CENTER_NAME!='BCCAGSC' AND CENTER_NAME!='UOKNOR' AND CENTER_NAME!='WUGSC'
* [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=SPECIES_CODE%3D%27FELIS+CATUS%27+AND+CENTER_NAME%3D%27WUGSC%27 TA Traces from WUGSC]
  ABC
* TA
  NISC
   #Query: SPECIES_CODE='FELIS CATUS'
  BCCAGSC
   #Query: SPECIES_CODE='FELIS CATUS' AND ( CENTER_NAME='ABC' OR CENTER_NAME='NISC' OR CENTER_NAME='BCCAGSC' OR CENTER_NAME='UOKNOR' OR CENTER_NAME='WUGSC')
  UOKNOR
   WUGSC: 1,243,987  
   WUGSC   : 1,243,987  
   total: 13,713,258
   total   : 13,713,258
* [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=SPECIES_CODE%3D%27FELIS+CATUS%27+AND+CENTER_NAME%3D%27WUGSC%27] WUGSC TA Traces
* [http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP002335] SRA Traces
  SRP002335
  454 GS FLX Titanium & Illumina Genome Analyzer II


* [http://www.ncbi.nlm.nih.gov/nuccore/AANG00000000 2X assembly contig sequences]   AANG01000001-AANG01817956
* [http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP002335 SRA Traces] ~ 363 Gbp  454 & Illumina
* [http://www.ncbi.nlm.nih.gov/nuccore/AANG00000000 2x whole genome shotgun assembly by the Broad Institute] 817,956 contigs  AANG01000001-AANG01817956

Latest revision as of 14:34, 15 June 2011

Data

 #Query: SPECIES_CODE='FELIS CATUS'
 #Query: SPECIES_CODE='FELIS CATUS' AND ( CENTER_NAME='ABC' OR CENTER_NAME='NISC' OR CENTER_NAME='BCCAGSC' OR CENTER_NAME='UOKNOR' OR CENTER_NAME='WUGSC')
 WUGSC:  1,243,987 
 total:  13,713,258
Retrieved from "https://wiki.umiacs.umd.edu/cbcb/index.php?title=Dpuiu_cat&oldid=8648"