Dpuiu snp: Difference between revisions

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* Soap
= Soap =


* [http://soap.genomics.org.cn/soapaligner.html soap2] & [http://soap.genomics.org.cn/soapsnp.html soapsnp]
* [http://soap.genomics.org.cn/soapaligner.html soap2] & [http://soap.genomics.org.cn/soapsnp.html soapsnp]
* Example:
  2bwt-builder genome.fasta
  soap2 –a frag_1.fastq -b frag_2.fastq -D genome.fasta.index -o frag.mated.soap2 -2 frag.single.soap -m 120 -x 240
  soapsnp -i frag.mated.soap2.sorted -d genome.fasta -o genome.cns

Revision as of 18:05, 25 May 2011

Soap

 2bwt-builder genome.fasta
 soap2 –a frag_1.fastq -b frag_2.fastq -D genome.fasta.index -o frag.mated.soap2 -2 frag.single.soap -m 120 -x 240
 soapsnp -i frag.mated.soap2.sorted -d genome.fasta -o genome.cns