Dpuiu snp: Difference between revisions

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* Example:
* Example:
   2bwt-builder genome.fasta
   2bwt-builder genome.fasta
   soap2 –a frag_1.fastq -b frag_2.fastq -D genome.fasta.index -o frag.mated.soap2 -2 frag.single.soap -m 120 -x 240
   soap2 –a frag_1.fastq -b frag_2.fastq -D genome.fasta.index -o frag.mated.soap -2 frag.single.soap -m 120 -x 240
   soapsnp -i frag.mated.soap2.sorted -d genome.fasta -o genome.cns
   soapsnp -i frag.mated.soap.sorted -d genome.fasta -o genome.cns

Revision as of 18:07, 25 May 2011

Soap

 2bwt-builder genome.fasta
 soap2 –a frag_1.fastq -b frag_2.fastq -D genome.fasta.index -o frag.mated.soap -2 frag.single.soap -m 120 -x 240
 soapsnp -i frag.mated.soap.sorted -d genome.fasta -o genome.cns