Francisella tularensis: Difference between revisions
Jump to navigation
Jump to search
| Line 54: | Line 54: | ||
* ~dpuiu/Data/F_tularensis/ | * ~dpuiu/Data/F_tularensis/ | ||
* /fs/szasmg/Bacteria/F_tularensis | * /fs/szasmg/Bacteria/F_tularensis | ||
== 454 == | |||
Paired End reads: | |||
* approximately 84-nucleotide DNA fragments | |||
* have a 44-mer adaptor sequence in the middle | |||
* flanked by a 20-mer sequence on each side. | |||
* The two flanking 20-mers are segments of DNA that were originally located approximately 2.5 kb apart in the genome of interest. | |||
* The ordering and orienting of contigs generates scaffolds which provide a high-quality draft sequence of the genome. | |||
[http://www.454.com/downloads/protocols/1_paired_end.pdf pair read article] | |||
Revision as of 14:27, 23 August 2007
Data Sources
NCBI:
Broad:
Baylor:
JGI:
Read Counts
Type A
- SCHU_S4 SDRA , Complete (1,892,819 bp)
- FSC033 Broad, Assembly (15 contigs) ***
- ATCC6223 Baylor (88 contigs) ***
Type B
- OSU18 Baylor, Complete (1,895,727 bp) ***
- KO97 Baylor (126 contigs) ***
- MI001730 Baylor (118 contigs) ***
- OR960246 Baylor (111 contigs) ***
- RC503 Baylor (115 contigs)
- 275 Broad (31 contigs) ***
- FSC022 Broad (19 contigs) ***
Novicida
- U112 Univ. of Washington, Complete 1,910,031 bp
- GA99-3548 Broad (18 contigs) ***
- GA99-3549 Broad (15 contigs) ***
Mediasiatica
File Locations on Disk
- /fs/szdata//ncbi/genomes/Bacteria/Francisella_tularensis
- ~dpuiu/Data/F_tularensis/
- /fs/szasmg/Bacteria/F_tularensis
454
Paired End reads:
* approximately 84-nucleotide DNA fragments * have a 44-mer adaptor sequence in the middle * flanked by a 20-mer sequence on each side. * The two flanking 20-mers are segments of DNA that were originally located approximately 2.5 kb apart in the genome of interest. * The ordering and orienting of contigs generates scaffolds which provide a high-quality draft sequence of the genome. pair read article