Difference between revisions of "Francisella tularensis"

From Cbcb
Jump to navigation Jump to search
Line 28: Line 28:
  
 
== Type A ==
 
== Type A ==
* [[Francisella_tularensis_tularensis_SCHU_S4|SCHU_S4]] SDRA , Complete (1,892,819 bp)
+
* [[Francisella_tularensis_tularensis_SCHU_S4|SCHU_S4]] SDRA , Complete (1,892,819 bp) NC_006570
* [[Francisella_tularensis_tularensis_FSC198|FSC198]] Univ. of Birmingham , Complete ( 1,892,616 bp)
+
* [[Francisella_tularensis_tularensis_FSC198|FSC198]] Univ. of Birmingham , Complete ( 1,892,616 bp) NC_008245
* [[Francisella_tularensis_tularensis_WY96-3418|WY96-3418]] BioHealthBase , Complete (1,898,476 bp)
+
* [[Francisella_tularensis_tularensis_WY96-3418|WY96-3418]] BioHealthBase , Complete (1,898,476 bp) NC_009257
 
* [[Francisella_tularensis_tularensis_FSC033|FSC033]] Broad, Assembly (15 contigs) ***
 
* [[Francisella_tularensis_tularensis_FSC033|FSC033]] Broad, Assembly (15 contigs) ***
 
* [[Francisella_tularensis_tularensis_ATCC6223|ATCC6223]] Baylor (88 contigs) ***
 
* [[Francisella_tularensis_tularensis_ATCC6223|ATCC6223]] Baylor (88 contigs) ***

Revision as of 19:09, 23 August 2007

Data Sources

NCBI:

Broad:

Baylor:

JGI:

Read Counts

Type A

  • SCHU_S4 SDRA , Complete (1,892,819 bp) NC_006570
  • FSC198 Univ. of Birmingham , Complete ( 1,892,616 bp) NC_008245
  • WY96-3418 BioHealthBase , Complete (1,898,476 bp) NC_009257
  • FSC033 Broad, Assembly (15 contigs) ***
  • ATCC6223 Baylor (88 contigs) ***

Type B

  • OSU18 Baylor, Complete (1,895,727 bp) ***
  • KO97 Baylor (126 contigs) ***
  • MI001730 Baylor (118 contigs) ***
  • OR960246 Baylor (111 contigs) ***
  • RC503 Baylor (115 contigs)
  • 275 Broad (31 contigs) ***
  • FSC022 Broad (19 contigs) ***

Novicida

  • U112 Univ. of Washington, Complete 1,910,031 bp
  • GA99-3548 Broad (18 contigs) ***
  • GA99-3549 Broad (15 contigs) ***

Mediasiatica

No traces available

File Locations on Disk

  • /fs/szdata//ncbi/genomes/Bacteria/Francisella_tularensis
  • ~dpuiu/Data/F_tularensis/
  • /fs/szasmg/Bacteria/F_tularensis

454

Paired End reads:

 * approximately 84-nucleotide DNA fragments 
 * have a 44-mer adaptor sequence in the middle 
 * flanked by a 20-mer sequence on each side. 
 * The two flanking 20-mers are segments of DNA that were originally located approximately 2.5 kb apart in the genome of interest.  
 * The ordering and orienting of contigs generates scaffolds which provide a high-quality draft sequence of the genome.
 pair read article