Difference between revisions of "Francisella tularensis holarctica KO97"
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BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 . . 431,608 SRA | BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 . . 431,608 SRA | ||
Total 647,104 | Total 647,104 | ||
| + | |||
| + | == Assembly == | ||
| + | |||
| + | Location: | ||
| + | /fs/szasmg2/Bacteria/F_tularensis_holarctica_KO97 | ||
| + | |||
| + | '''2007_0821_454''' | ||
| + | newbler assembly of 4WG_FTUL.KO_000sA library | ||
| + | |||
| + | /* | ||
| + | ** Consensus results. | ||
| + | */ | ||
| + | consensusResults | ||
| + | { | ||
| + | readStatus | ||
| + | { | ||
| + | numberAssembled = 399279; | ||
| + | numberPartial = 8579; | ||
| + | numberSingleton = 5027; | ||
| + | numberRepeat = 17452; | ||
| + | numberOutlier = 1271; | ||
| + | } | ||
| + | |||
| + | largeContigMetrics | ||
| + | { | ||
| + | numberOfContigs = 123; | ||
| + | numberOfBases = 1760154; | ||
| + | |||
| + | avgContigSize = 14310; | ||
| + | N50ContigSize = 21671; | ||
| + | largestContigSize = 52092; | ||
| + | |||
| + | Q40PlusBases = 1755769, 99.75%; | ||
| + | Q39MinusBases = 4385, 0.25%; | ||
| + | } | ||
| + | |||
| + | allContigMetrics | ||
| + | { | ||
| + | numberOfContigs = 175; | ||
| + | numberOfBases = 1767552; | ||
| + | } | ||
| + | } | ||
Revision as of 15:10, 22 August 2007
Center: Baylor
Status: Assembly (126 contigs; 1,763,979 bp; maxLen=77,480 bp; avgLen=13,999 bp)
Data
Libraries:
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT LOCATION
BCM BFTH KO97 BFTHP WGS 6,250 1,250 1,439 TA BCM BFTG KO97 BFTGP WGS 4,000 1,000 1,469 TA BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000pA 454 . . 212,588 SRA ? BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 . . 431,608 SRA Total 647,104
Assembly
Location:
/fs/szasmg2/Bacteria/F_tularensis_holarctica_KO97
2007_0821_454
newbler assembly of 4WG_FTUL.KO_000sA library
/*
** Consensus results.
*/
consensusResults
{
readStatus
{
numberAssembled = 399279;
numberPartial = 8579;
numberSingleton = 5027;
numberRepeat = 17452;
numberOutlier = 1271;
}
largeContigMetrics
{
numberOfContigs = 123;
numberOfBases = 1760154;
avgContigSize = 14310;
N50ContigSize = 21671;
largestContigSize = 52092;
Q40PlusBases = 1755769, 99.75%;
Q39MinusBases = 4385, 0.25%;
}
allContigMetrics
{
numberOfContigs = 175;
numberOfBases = 1767552;
}
}