Difference between revisions of "Francisella tularensis holarctica KO97"

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Line 13: Line 13:
 
   BCM    4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 .    .    431,608 SRA
 
   BCM    4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 .    .    431,608 SRA
 
   Total                                                          647,104
 
   Total                                                          647,104
 +
 +
== Assembly ==
 +
 +
Location:
 +
  /fs/szasmg2/Bacteria/F_tularensis_holarctica_KO97
 +
 +
'''2007_0821_454'''
 +
  newbler assembly of 4WG_FTUL.KO_000sA library
 +
 +
  /*
 +
  **  Consensus results.
 +
  */
 +
  consensusResults
 +
  {
 +
        readStatus
 +
        {
 +
                numberAssembled = 399279;
 +
                numberPartial  = 8579;
 +
                numberSingleton = 5027;
 +
                numberRepeat    = 17452;
 +
                numberOutlier  = 1271;
 +
        }
 +
 +
        largeContigMetrics
 +
        {
 +
                numberOfContigs  = 123;
 +
                numberOfBases    = 1760154;
 +
 +
                avgContigSize    = 14310;
 +
                N50ContigSize    = 21671;
 +
                largestContigSize = 52092;
 +
 +
                Q40PlusBases      = 1755769, 99.75%;
 +
                Q39MinusBases    = 4385, 0.25%;
 +
        }
 +
 +
        allContigMetrics
 +
        {
 +
                numberOfContigs = 175;
 +
                numberOfBases  = 1767552;
 +
        }
 +
  }

Revision as of 15:10, 22 August 2007

Center: Baylor

 Status: Assembly (126 contigs; 1,763,979 bp; maxLen=77,480 bp; avgLen=13,999 bp)

Data

Libraries:

 CENTER  PROJECT     STRAIN   LIB               TYPE SIZE STDEV COUNT   LOCATION
 BCM     BFTH        KO97     BFTHP             WGS 6,250 1,250 1,439   TA
 BCM     BFTG        KO97     BFTGP             WGS 4,000 1,000 1,469   TA
 BCM     4WG_FTUL.KO KO971026 4WG_FTUL.KO_000pA 454 .     .     212,588 SRA ?
 BCM     4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 .     .     431,608 SRA
 Total                                                          647,104

Assembly

Location:

 /fs/szasmg2/Bacteria/F_tularensis_holarctica_KO97

2007_0821_454

 newbler assembly of 4WG_FTUL.KO_000sA library
 /*
 **  Consensus results.
 */
 consensusResults
 {
       readStatus
       {
               numberAssembled = 399279;
               numberPartial   = 8579;
               numberSingleton = 5027;
               numberRepeat    = 17452;
               numberOutlier   = 1271;
       }

       largeContigMetrics
       {
               numberOfContigs   = 123;
               numberOfBases     = 1760154;

               avgContigSize     = 14310;
               N50ContigSize     = 21671;
               largestContigSize = 52092;

               Q40PlusBases      = 1755769, 99.75%;
               Q39MinusBases     = 4385, 0.25%;
       }

       allContigMetrics
       {
               numberOfContigs = 175;
               numberOfBases   = 1767552;
       }
 }