Francisella tularensis holarctica KO97: Difference between revisions
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'''2007_0821_454''' | '''2007_0821_454''' | ||
newbler assembly of 4WG_FTUL.KO_000sA library | newbler assembly of 4WG_FTUL.KO_000sA library | ||
/* | /* | ||
** Consensus results. | ** Consensus results. | ||
Line 56: | Line 55: | ||
} | } | ||
== 2007_0822_454 == | |||
newbler assembly of 4WG_FTUL.KO_000p & 4WG_FTUL.KO_000sA libraries | |||
/* | |||
** Consensus results. | |||
*/ | |||
consensusResults | |||
{ | |||
readStatus | |||
{ | |||
numberAssembled = 399206; | |||
numberPartial = 8743; | |||
numberSingleton = 5027; | |||
numberRepeat = 17277; | |||
numberOutlier = 1355; | |||
} | |||
pairedReadStatus | |||
{ | |||
numberWithBothMapped = 160501; | |||
numberWithOneUnmapped = 6487; | |||
numberMultiplyMapped = 16987; | |||
numberWithBothUnmapped = 354; | |||
} | |||
scaffoldMetrics | |||
{ | |||
numberOfScaffolds = 12; | |||
numberOfBases = 1761805; | |||
avgScaffoldSize = 146817; | |||
N50ScaffoldSize = 307646; | |||
largestScaffoldSize = 341670; | |||
} | |||
largeContigMetrics | |||
{ | |||
numberOfContigs = 114; | |||
numberOfBases = 1751786; | |||
avgContigSize = 15366; | |||
N50ContigSize = 21680; | |||
largestContigSize = 52088; | |||
Q40PlusBases = 1747448, 99.75%; | |||
Q39MinusBases = 4338, 0.25%; | |||
} | |||
allContigMetrics | |||
{ | |||
numberOfContigs = 174; | |||
numberOfBases = 1767690; | |||
} | |||
} |
Revision as of 15:54, 22 August 2007
Center: Baylor
Status: Assembly (126 contigs; 1,763,979 bp; maxLen=77,480 bp; avgLen=13,999 bp)
Data
Libraries:
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT LOCATION
BCM BFTH KO97 BFTHP WGS 6,250 1,250 1,439 TA BCM BFTG KO97 BFTGP WGS 4,000 1,000 1,469 TA BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000pA 454 . . 212,588 SRA ? BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 . . 431,608 SRA Total 647,104
Assembly
Location:
/fs/szasmg2/Bacteria/F_tularensis_holarctica_KO97
2007_0821_454
newbler assembly of 4WG_FTUL.KO_000sA library /* ** Consensus results. */ consensusResults { readStatus { numberAssembled = 399279; numberPartial = 8579; numberSingleton = 5027; numberRepeat = 17452; numberOutlier = 1271; } largeContigMetrics { numberOfContigs = 123; numberOfBases = 1760154; avgContigSize = 14310; N50ContigSize = 21671; largestContigSize = 52092; Q40PlusBases = 1755769, 99.75%; Q39MinusBases = 4385, 0.25%; } allContigMetrics { numberOfContigs = 175; numberOfBases = 1767552; } }
2007_0822_454
newbler assembly of 4WG_FTUL.KO_000p & 4WG_FTUL.KO_000sA libraries /* ** Consensus results. */ consensusResults { readStatus { numberAssembled = 399206; numberPartial = 8743; numberSingleton = 5027; numberRepeat = 17277; numberOutlier = 1355; } pairedReadStatus { numberWithBothMapped = 160501; numberWithOneUnmapped = 6487; numberMultiplyMapped = 16987; numberWithBothUnmapped = 354; } scaffoldMetrics { numberOfScaffolds = 12; numberOfBases = 1761805; avgScaffoldSize = 146817; N50ScaffoldSize = 307646; largestScaffoldSize = 341670; } largeContigMetrics { numberOfContigs = 114; numberOfBases = 1751786; avgContigSize = 15366; N50ContigSize = 21680; largestContigSize = 52088; Q40PlusBases = 1747448, 99.75%; Q39MinusBases = 4338, 0.25%; } allContigMetrics { numberOfContigs = 174; numberOfBases = 1767690; } }