Francisella tularensis holarctica KO97: Difference between revisions
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BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 . . 431,608 SRA | BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 . . 431,608 SRA | ||
Total 647,104 | Total 647,104 | ||
== Assembly == | |||
Location: | |||
/fs/szasmg2/Bacteria/F_tularensis_holarctica_KO97 | |||
'''2007_0821_454''' | |||
newbler assembly of 4WG_FTUL.KO_000sA library | |||
/* | |||
** Consensus results. | |||
*/ | |||
consensusResults | |||
{ | |||
readStatus | |||
{ | |||
numberAssembled = 399279; | |||
numberPartial = 8579; | |||
numberSingleton = 5027; | |||
numberRepeat = 17452; | |||
numberOutlier = 1271; | |||
} | |||
largeContigMetrics | |||
{ | |||
numberOfContigs = 123; | |||
numberOfBases = 1760154; | |||
avgContigSize = 14310; | |||
N50ContigSize = 21671; | |||
largestContigSize = 52092; | |||
Q40PlusBases = 1755769, 99.75%; | |||
Q39MinusBases = 4385, 0.25%; | |||
} | |||
allContigMetrics | |||
{ | |||
numberOfContigs = 175; | |||
numberOfBases = 1767552; | |||
} | |||
} |
Revision as of 15:10, 22 August 2007
Center: Baylor
Status: Assembly (126 contigs; 1,763,979 bp; maxLen=77,480 bp; avgLen=13,999 bp)
Data
Libraries:
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT LOCATION
BCM BFTH KO97 BFTHP WGS 6,250 1,250 1,439 TA BCM BFTG KO97 BFTGP WGS 4,000 1,000 1,469 TA BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000pA 454 . . 212,588 SRA ? BCM 4WG_FTUL.KO KO971026 4WG_FTUL.KO_000sA 454 . . 431,608 SRA Total 647,104
Assembly
Location:
/fs/szasmg2/Bacteria/F_tularensis_holarctica_KO97
2007_0821_454
newbler assembly of 4WG_FTUL.KO_000sA library
/* ** Consensus results. */ consensusResults { readStatus { numberAssembled = 399279; numberPartial = 8579; numberSingleton = 5027; numberRepeat = 17452; numberOutlier = 1271; } largeContigMetrics { numberOfContigs = 123; numberOfBases = 1760154; avgContigSize = 14310; N50ContigSize = 21671; largestContigSize = 52092; Q40PlusBases = 1755769, 99.75%; Q39MinusBases = 4385, 0.25%; } allContigMetrics { numberOfContigs = 175; numberOfBases = 1767552; } }