Homo sapiens: Difference between revisions

From Cbcb
Jump to navigation Jump to search
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
= Data =  
= Data =


* [ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/ NCBI ftp]
* [ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/NCBI ftp]
* [http://www.cbcb.umd.edu/~langmead/solexa_1000genomes.html Ben's 1]
* [http://www.cbcb.umd.edu/~langmead/solexa_format.html Ben's 2]
* /fs/szdata/genomes/human_ncbi_build36/      NCBI build36.1 May 2006 (Current build is 36.3 March 2008)
* /fs/szdata/genomes/human_celera_2001_Orig/


= 1000 genomes =
= Build 36 (hs_ref) =
 
  Chr            len      GC%
  NC_000001      247249719 42.49 
  NC_000002      242951149 40.45 
  NC_000003      199501827 39.94 
  NC_000004      191273063 38.46 
  NC_000005      180857866 39.70 
  NC_000006      170899992 39.82 
  NC_000007      158821424 40.96 
  NC_000008      146274826 40.41 
  NC_000009      140273252 42.56 
  NC_000010      135374737 41.82 
  NC_000011      134452384 41.77 
  NC_000012      132349534 40.95 
  NC_000013      114142980 40.39 
  NC_000014      106368585 42.44 
  NC_000015      100338915 43.68 
  NC_000016      88827254  45.37 
  NC_000017      78774742  45.59 
  NC_000018      76117153  39.98 
  NC_000019      63811651  48.57 
  NC_000020      62435964  44.40 
  NC_000021      46944323  43.36 
  NC_000022      49691432  48.59 
  NC_000023      154913754 39.76 
  NC_000024      57772954  45.54 
 
= Articles =
 
* [http://www.sciencemag.org/cgi/content/full/291/5507/1304  The Sequence of the Human Genome Science Feb 2001] Celera Assembly
* [http://www.nature.com/nature/journal/v452/n7189/pdf/nature06884.pdf  J.Watson's genome Nature April 2008(pdf)]
* [http://www.nature.com/nature/journal/v452/n7189/full/nature06884.html J.Watson's genome Nature April 2008(full)]
* [http://www.nature.com/nature/journal/v452/n7189/extref/nature06884-s1.pdf J.Watson's genome (supplementary info)]
* [http://www.nature.com/nbt/journal/vaop/ncurrent/abs/nbt.1596.html Building the sequence map of the human pan-genome Nature Dec 2009], [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.1596.html#online-methods Online methods]
 
* [http://yh.genomics.org.cn/ 1st Asian diploid genome]
* [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.1596.html Building the sequence map of the human pan-genome] Nature Dec 2009

Latest revision as of 15:46, 7 January 2010

Data

  • ftp
  • Ben's 1
  • Ben's 2
  • /fs/szdata/genomes/human_ncbi_build36/ NCBI build36.1 May 2006 (Current build is 36.3 March 2008)
  • /fs/szdata/genomes/human_celera_2001_Orig/

Build 36 (hs_ref)

 Chr            len       GC%
 NC_000001      247249719 42.49  
 NC_000002      242951149 40.45  
 NC_000003      199501827 39.94  
 NC_000004      191273063 38.46  
 NC_000005      180857866 39.70  
 NC_000006      170899992 39.82  
 NC_000007      158821424 40.96  
 NC_000008      146274826 40.41  
 NC_000009      140273252 42.56  
 NC_000010      135374737 41.82  
 NC_000011      134452384 41.77  
 NC_000012      132349534 40.95  
 NC_000013      114142980 40.39  
 NC_000014      106368585 42.44  
 NC_000015      100338915 43.68  
 NC_000016      88827254  45.37  
 NC_000017      78774742  45.59  
 NC_000018      76117153  39.98  
 NC_000019      63811651  48.57  
 NC_000020      62435964  44.40  
 NC_000021      46944323  43.36  
 NC_000022      49691432  48.59  
 NC_000023      154913754 39.76  
 NC_000024      57772954  45.54  

Articles