Methanobrevibacter smithii: Difference between revisions
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= Data = | = Data = | ||
== NCBI== | == NCBI == | ||
1 complete strain: NC_009515.1 1,853,160bp | |||
* Ref: /fs/szdata/ncbi/ftp.ncbi.nih.gov/genomes/Bacteria/Methanobrevibacter_smithii_ATCC_35061/*fna | |||
* Published: [http://www.pnas.org/content/104/25/10643.long Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut] PNAS | |||
* Assembled: Phrap and PCAP | |||
== WUSTL (Gordon Lab) == | == WUSTL (Gordon Lab) == | ||
* 22 strains | * 22 strains | ||
Revision as of 20:34, 15 December 2009
Data
NCBI
1 complete strain: NC_009515.1 1,853,160bp
- Ref: /fs/szdata/ncbi/ftp.ncbi.nih.gov/genomes/Bacteria/Methanobrevibacter_smithii_ATCC_35061/*fna
- Published: Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut PNAS
- Assembled: Phrap and PCAP
WUSTL (Gordon Lab)
- 22 strains
- half-way through sequencing (should have all the data by early to mid-January)
- right now (--Dpuiu 15:19, 15 December 2009 (EST)):
- 10 strains sequenced by GAII Illumina (36mers) with 3-8 million reads per strain (coverage is 50-150x),
- 12 strains sequenced by 454-Titanium sequencing, with 20,000 to 90,000 reads per strain (coverage is ~5-20x).