Methanobrevibacter smithii

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Revision as of 20:44, 15 December 2009 by Dpuiu (talk | contribs) (→‎Data)
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Data

NCBI

1 complete + 2 draft assembly strains:

Methanobrevibacter smithii ATCC 35061

Methanobrevibacter smithii DSM 2374 =

  • draft: NZ_ABYV02000000
  • 1,727,775 bp
  • 25 contigs: NZ_ABYV02000001 .. NZ_ABYV02000025

Methanobrevibacter smithii DSM 2375

  • draft: NZ_ABYW00000000
  • 1,704,865 bp
  • 24 contigs: NZ_ABYW01000001 .. NZ_ABYW01000024

Methanobrevibacter smithii DSM 11975

  • progress

WUSTL (Gordon Lab)

  • 22 strains
  • half-way through sequencing (should have all the data by early to mid-January)
  • right now (--Dpuiu 15:19, 15 December 2009 (EST)):
    • 10 strains sequenced by GAII Illumina (36mers) with 3-8 million reads per strain (coverage is 50-150x),
    • 12 strains sequenced by 454-Titanium sequencing, with 20,000 to 90,000 reads per strain (coverage is ~5-20x).