From Cbcb
Revision as of 14:03, 13 August 2009 by Cmhill (talk | contribs) (→‎Options)
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Partition is a python script that takes an input of regular expressions and metadata to build an xml file of matching header information from a fasta-formatted file. is located at:

  • /fs/szasmg/metagenomics/Partition/ [latest stable]
  • /fs/szasmg/metagenomics/Partition/MetaPart/src/ [latest but possibly unstable builds]


-p Populate the given partition/XML. -b Given the input file, build a partition. -m Metadata file that will be used to populate the partitions. -h Header information for the metadata, if not present column information

     for metadata will be found in first line of the metadata.

-f Input fasta file. -s Split the fasta file based on the partition information and output to the directory. -o Name of the output .part file. -c Convert an old partition format into the new xml format.