Pine tree: Difference between revisions
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FC638TR_002_8 146 18,412,638 | FC638TR_002_8 146 18,412,638 | ||
* Local | * Local data | ||
ginkgo: | ginkgo: | ||
/scratch1/dpuiu/PINE/ | /scratch1/dpuiu/PINE/ | ||
/scratch1/dpuiu/PINE/sample/ # 100K mates sampled from each lib | /scratch1/dpuiu/PINE/sample/ # 100K mates sampled from each lib | ||
/scratch1/dpuiu/PINE/sample/*stats | /scratch1/dpuiu/PINE/sample/*stats | ||
* Notes: | |||
First 2bp of each read have higher A count |
Revision as of 15:15, 21 June 2011
Links
Data
- IPST ftp
ftp genomepc1.umd.edu ftpuser pinegenome cd PineUpload052911/ bin mget ...
- cBAC stats
. elem min q1 q2 q3 max mean n50 sum len 102 8288 89909 116121 140549 172161 113400 126689 11566806 gc% 102 34.44 36.56 37.61 38.80 52.88 37.94 37.66 3870.87
- cChloroplast
len 120481 gc% 38.55
- Reads
readLen #mates FC638TR_001_8 146 22,729,231 FC638TR_002_8 146 18,412,638
- Local data
ginkgo: /scratch1/dpuiu/PINE/ /scratch1/dpuiu/PINE/sample/ # 100K mates sampled from each lib /scratch1/dpuiu/PINE/sample/*stats
- Notes:
First 2bp of each read have higher A count