Pine tree

From Cbcb
Revision as of 15:15, 21 June 2011 by Dpuiu (talk | contribs)
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Links

Data

  • IPST ftp
 ftp genomepc1.umd.edu
 ftpuser
 pinegenome

 cd PineUpload052911/
 bin
 mget ...
  • cBAC stats
 .       elem       min    q1     q2     q3     max        mean       n50        sum            
 len     102        8288   89909  116121 140549 172161     113400     126689     11566806       
 gc%     102        34.44  36.56  37.61  38.80  52.88      37.94      37.66      3870.87        
  • cChloroplast
 len     120481 
 gc%     38.55
  • Reads
                readLen   #mates
 FC638TR_001_8  146       22,729,231
 FC638TR_002_8  146       18,412,638
  • Local data
 ginkgo:
 /scratch1/dpuiu/PINE/
 /scratch1/dpuiu/PINE/sample/        # 100K mates sampled from each lib
 /scratch1/dpuiu/PINE/sample/*stats
  • Notes:
 First 2bp of each read have higher A count