Pseudodomonas syringae

From Cbcb
Revision as of 19:15, 9 October 2007 by Dpuiu (talk | contribs)
Jump to navigation Jump to search

Pseudodomonas syringae strain DC 3000

Originally sequenced and finished at TIGR

UNC:

New sequence:

  • Solexa 3 lanes;
  • 454 shotgun 1/4 Plate (250bp read);
  • 454 paired ends 1/4 Plate.

Download: http://biology622.dhcp.unc.edu/~labweb/DCData/

  • Theoretical minimum number of contigs we can obtain is 268 (our reads fail to cover 269 nucleotides).
  • Our de novo assembly spans the genome in 853 contigs totaling 6,313,026 bp.
  • 98.7% of the genome is covered by a contig;
  • 84% of the genome is covered by contigs 10,000 bp or greater.
  • The average gap size between contigs is 98 bp;
  • average contig size 7401 bp.
  • The N50 = 37,444 bp.
  • Our largest BAMBUS "scaffold" is 2,565,761 bp,