Repeat search: Difference between revisions

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* [http://www.repeatmasker.org/ RepeatMasker] ; [http://www.girinst.org/server/RepBase RepBase] : mostly eukariotic genomes
* [http://www.repeatmasker.org/ RepeatMasker] ; [http://www.girinst.org/server/RepBase RepBase] : mostly eukariotic genomes
* [http://minisatellites.u-psud.fr/GPMS/ Microorganisms Tandem Repeats Database (Online,FR)]
* [http://minisatellites.u-psud.fr/GPMS/ Microorganisms Tandem Repeats Database (Online,FR)]
* [http://crispr.u-psud.fr/Server/CRISPRfinder.php/ CRISPRfinder (Online,FR)]
* [http://crispr.u-psud.fr/Server/CRISPRfinder.php/ CRISPRfinder (Online,FR)]; [http://nar.oxfordjournals.org/cgi/content/full/gkm360v2 Article]

Revision as of 13:20, 5 November 2008

Tandem repeats

  • satellites (spanning megabases of DNA, associated with heterochromatin)
  • minisatellites (repeat units in the range 6-100 bp, spanning hundreds of base-pairs)
  • microsatellites (repeat units in the range 1-5 bp, spanning a few tens of nucleotides).

Software Packages