User contributions for Tgibbons
Jump to navigation
Jump to search
5 September 2010
- 05:5405:54, 5 September 2010 diff hist +412 Cbcb:Pop-Lab:Ted-Report →September 10, 2010: Created entry current
26 August 2010
- 17:4117:41, 26 August 2010 diff hist −393 User:Tgibbons:Project-Ideas Rearranged the layout current
18 August 2010
- 02:5802:58, 18 August 2010 diff hist +388 User:Tgibbons:Project-Ideas →Potential Research Projects Inspired by ''Microbial Inhabitants of Humans'': Added thematic header
17 August 2010
13 August 2010
- 22:3022:30, 13 August 2010 diff hist +1,250 User:Tgibbons:Project-Ideas →Metagenomic assembly: Added ideas for a preliminary experiment
- 22:1422:14, 13 August 2010 diff hist +684 User:Tgibbons:Project-Ideas Added section for thoughts on my career in general
11 August 2010
- 03:2003:20, 11 August 2010 diff hist +451 User:Tgibbons:Project-Ideas →Metagenomic assembly: I cleaned up a lot of the notes I jotted down yesterday
- 02:3102:31, 11 August 2010 diff hist −35 m User:Tgibbons:Project-Ideas →Metagenomic assembly
- 01:5601:56, 11 August 2010 diff hist +472 m User:Tgibbons:Project-Ideas →Metagenomic assembly
- 01:3901:39, 11 August 2010 diff hist +752 m User:Tgibbons:Project-Ideas →Metagenomic assembly
10 August 2010
- 03:3503:35, 10 August 2010 diff hist +757 User:Tgibbons:Project-Ideas →Metagenomic assembly: Added a bunch of details. It's not complete, but it's a serious start at considering this project.
- 03:0903:09, 10 August 2010 diff hist +273 m User:Tgibbons:Project-Ideas →Metagenomic assembly
- 03:0003:00, 10 August 2010 diff hist +10 m User:Tgibbons:Project-Ideas →Metagenomic assembly
- 02:3602:36, 10 August 2010 diff hist +215 m User:Tgibbons:Project-Ideas →Metagenomic assembly
- 02:3202:32, 10 August 2010 diff hist +392 m User:Tgibbons:Project-Ideas →Metagenomic assembly
- 02:2102:21, 10 August 2010 diff hist +35 m User:Tgibbons:Project-Ideas →Metagenomic assembly
- 02:1602:16, 10 August 2010 diff hist +281 User:Tgibbons:Project-Ideas →Metagenomic assembly
- 01:5201:52, 10 August 2010 diff hist +95 m User:Tgibbons:Project-Ideas →Metagenomic assembly
- 01:4001:40, 10 August 2010 diff hist +253 User:Tgibbons:Project-Ideas →Metagenomic assembly
- 01:3101:31, 10 August 2010 diff hist +323 User:Tgibbons:Project-Ideas →Metagenomic assembly
- 01:1701:17, 10 August 2010 diff hist +11 User:Tgibbons:Project-Ideas →Potential Research Projects Inspired by ''Microbial Inhabitants of Humans'': Reformatted the headers for each project
- 01:1501:15, 10 August 2010 diff hist +55 User:Tgibbons Added link to my project ideas page current
9 August 2010
- 17:4717:47, 9 August 2010 diff hist +1,225 User:Tgibbons:Project-Ideas →(pre)Binning to improve metagenomic assembly: Added more to the prebinning entry
- 17:3217:32, 9 August 2010 diff hist +2,504 User:Tgibbons:Project-Ideas →Other Potential Research Projects: Added a bunch of stuff about the prebinning project with Arthur
- 16:0816:08, 9 August 2010 diff hist +207 User:Tgibbons:Project-Ideas →Other Potential Research Projects
- 15:5515:55, 9 August 2010 diff hist +2 m Cbcb:Pop-Lab:Ted-Report →Other Potential Research Projects
- 15:5415:54, 9 August 2010 diff hist +2 m Cbcb:Pop-Lab:Ted-Report →Possible Research Projects Inspired by ''Microbial Inhabitants of Humans''
- 15:5415:54, 9 August 2010 diff hist −1,061 Cbcb:Pop-Lab:Ted-Report →Possible Research Projects Inspired by ''Microbial Inhabitants of Humans'': Replaced with a link to a dedicated page I created for my project ideas
- 15:5315:53, 9 August 2010 diff hist −1,039 Cbcb:Pop-Lab:Ted-Report →Other Potential Research Projects: Replaced with link to new dedicated page for my project ideas
- 15:5115:51, 9 August 2010 diff hist +2,591 N User:Tgibbons:Project-Ideas Moved previous ideas from my progress report
- 15:2915:29, 9 August 2010 diff hist +1,226 Cbcb:Pop-Lab:Ted-Report →August 13, 2010: Created a new entry with a subsection for my project ideas
27 July 2010
- 19:3419:34, 27 July 2010 diff hist +288 Cbcb:Pop-Lab:Ted-Report →July 23, 2010: Addedentry for week ending July 30, 2010, and a section for metagenomics papers I should read when I'm done with this book
22 July 2010
- 18:2318:23, 22 July 2010 diff hist +738 Cbcb:Pop-Lab:Ted-Report →Potential Research Projects Inspired by ''Microbial Inhabitants of Humans''
- 17:1817:18, 22 July 2010 diff hist +528 Cbcb:Pop-Lab:Ted-Report →July 23, 2010: Started section to brainstorm research projects I'd like to look into
- 04:1604:16, 22 July 2010 diff hist +206 Cbcb:Pop-Lab:Ted-Report →July 23, 2010
- 03:1903:19, 22 July 2010 diff hist +59 Cbcb:Pop-Lab:Ted-Report →July 23, 2010
- 03:0803:08, 22 July 2010 diff hist +1,729 Cbcb:Pop-Lab:Ted-Report →July 23, 2010: Created entry
4 June 2010
- 18:5818:58, 4 June 2010 diff hist +98 m Communal Software →Introduction
- 18:5618:56, 4 June 2010 diff hist +2,498 N Communal Software Created page
- 18:1018:10, 4 June 2010 diff hist +23 Main Page →Getting started: Created and linked to communal software page
26 May 2010
- 21:5221:52, 26 May 2010 diff hist +57 m Cbcb:Pop-Lab:16S-pipeline 16S analysis pipeline (for Gates project) →Directory structure
- 21:3021:30, 26 May 2010 diff hist −54 Cbcb:Pop-Lab:16S-pipeline 16S analysis pipeline (for Gates project) →Directory structure: Fixed some indeces, but the file structure appears to already be slightly out of date.
5 April 2010
- 15:3215:32, 5 April 2010 diff hist +152 Main Page →Getting started: Added links to the recently created resources pages
29 March 2010
- 02:3702:37, 29 March 2010 diff hist +818 Cbcb:Pop-Lab:Ted-Report →April 2, 2010: Added entry for week ending April 2
- 02:3002:30, 29 March 2010 diff hist +795 Cbcb:Pop-Lab:Ted-Report →March 26, 2010: Finished my thoughts for the week
26 March 2010
- 20:2520:25, 26 March 2010 diff hist +932 Cbcb:Pop-Lab:Ted-Report →February 19, 2010: created an entry for March 26
19 February 2010
- 19:5219:52, 19 February 2010 diff hist +99 Cbcb:Pop-Lab:Ted-Report →February 19, 2010
- 17:4617:46, 19 February 2010 diff hist +793 Cbcb:Pop-Lab:Ted-Report →February 5, 2010: Created entries for the next two weeks
3 February 2010
- 02:0902:09, 3 February 2010 diff hist +1,478 Cbcb:Pop-Lab:Ted-Report →Biomarker Assembly: Finished entry
2 February 2010
- 23:3723:37, 2 February 2010 diff hist +1,438 Cbcb:Pop-Lab:Ted-Report →February 5, 2010: Part two. Still have more to write.
- 23:1923:19, 2 February 2010 diff hist +1,160 Cbcb:Pop-Lab:Ted-Report →UMIACS Resources: Creating a new entry for this week. Saving my work half way through.
- 23:0123:01, 2 February 2010 diff hist +218 Cbcb:Pop-Lab:Ted-Report →Other Observations About the Assemblies: Noted a blunder
26 January 2010
- 13:4513:45, 26 January 2010 diff hist 0 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added data for the 16 million read assembly
- 05:4805:48, 26 January 2010 diff hist +5 m Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 05:4305:43, 26 January 2010 diff hist 0 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Tweaked the mem model for the overlapper
- 05:4205:42, 26 January 2010 diff hist +505 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Continued tweeking the tables and adding more data
- 04:4404:44, 26 January 2010 diff hist +178 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added more data and models for the minimus assemblies on walnut
25 January 2010
- 22:4422:44, 25 January 2010 diff hist +2 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added overlapper performance for 8M reads on walnut
- 18:4018:40, 25 January 2010 diff hist +1 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added tigger performance for 2M reads on walnut
- 18:1518:15, 25 January 2010 diff hist +3 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added overlapper performance for 4M reads on walnut
- 17:2717:27, 25 January 2010 diff hist +705 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added performance table for minimus on walnut
- 16:5916:59, 25 January 2010 diff hist −2,107 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Deleted all the info that I'd compiled into the minimus performance table
- 16:0616:06, 25 January 2010 diff hist +2 Cbcb:Pop-Lab:Ted-Report →UMIACS Resources: made this a sub-heading under this week's entry
- 16:0516:05, 25 January 2010 diff hist +691 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added an updated, accurate subset of the resources page
- 00:1000:10, 25 January 2010 diff hist +26 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Replaced carats with proper superscripts
- 00:0600:06, 25 January 2010 diff hist +147 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added better models derived using openoffice
24 January 2010
- 18:5418:54, 24 January 2010 diff hist +31 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Corrected some statements I'd made based on faulty late-night math
- 18:1318:13, 24 January 2010 diff hist 0 m Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 18:1318:13, 24 January 2010 diff hist −101 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added data for the 8 million read assembly
- 18:1018:10, 24 January 2010 diff hist +105 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added data for the 8 million read assembly
- 18:0518:05, 24 January 2010 diff hist +1 m Cbcb:Pop-Lab:Ted-Report →January 29, 2010
- 18:0518:05, 24 January 2010 diff hist +893 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 18:0218:02, 24 January 2010 diff hist −734 Cbcb:Pop-Lab:Ted-Report →Run Time Analysis
- 18:0218:02, 24 January 2010 diff hist +251 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added a lousy model for the run time of the minimus contigger
- 17:5217:52, 24 January 2010 diff hist +38 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 17:5117:51, 24 January 2010 diff hist +38 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added informative sub-heading. I'm thinking about making that a thing this year.
- 17:5017:50, 24 January 2010 diff hist +1,036 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Finally added the table
- 17:1617:16, 24 January 2010 diff hist +1,508 Cbcb:Pop-Lab:Ted-Report →January 22, 2010: fin.
- 16:3916:39, 24 January 2010 diff hist +8 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:1216:12, 24 January 2010 diff hist +3,857 Cbcb:Pop-Lab:Ted-Report →January 15, 2010: Added a post for Jan 22. Not done yet, but need food badly or will die. bbl
- 15:3815:38, 24 January 2010 diff hist +68 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added data for the 4 million & million read runs
- 07:0907:09, 24 January 2010 diff hist +125 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added moar values
- 06:4906:49, 24 January 2010 diff hist +230 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Fixed the models I was using to estimate minimus run time
- 06:3606:36, 24 January 2010 diff hist +735 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added some general notes about the minimus assemblies
- 06:1806:18, 24 January 2010 diff hist +11 Cbcb:Pop-Lab:Ted-Report →January 29, 2010
- 06:0906:09, 24 January 2010 diff hist +120 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Partially updated with information about the 20 million read minimus assembly
23 January 2010
- 23:2323:23, 23 January 2010 diff hist +799 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added more data, plus a couple of questionable models for the minimus run time
- 22:0822:08, 23 January 2010 diff hist −14 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Updated some values
- 22:0122:01, 23 January 2010 diff hist +20 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Updated some values
- 21:2321:23, 23 January 2010 diff hist +634 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added more data. I really need to put this in a table.
- 20:5720:57, 23 January 2010 diff hist +394 Cbcb:Pop-Lab:Ted-Report →January 15, 2010: Started an entry for week ending Jan 29, 2010
22 January 2010
- 23:1323:13, 22 January 2010 diff hist −2 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary current
21 January 2010
- 02:4302:43, 21 January 2010 diff hist 0 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary
20 January 2010
- 21:2421:24, 20 January 2010 diff hist 0 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary
- 16:4316:43, 20 January 2010 diff hist −51 Cbcb:Pop-Lab:How-to Redirected the "getting started in CBCB" link to the page I created current
- 16:3816:38, 20 January 2010 diff hist −1 m Cbcb:Pop-Lab:Challenges No edit summary current
19 January 2010
- 17:1317:13, 19 January 2010 diff hist +492 Getting Started in CBCB →Configuring Your Home Directory and Shell: Added config instructions for .bash_profile
- 16:4816:48, 19 January 2010 diff hist +803 Getting Started in CBCB →Configuring Your Home Directory and Shell: Replaced my email address with actual instructions for configuring a fresh bashrc file
14 January 2010
- 19:4219:42, 14 January 2010 diff hist −10 m Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 18:3418:34, 14 January 2010 diff hist +93 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation: Added some commands for running minimus
- 18:0718:07, 14 January 2010 diff hist +71 Cbcb:Pop-Lab:Ted-Report →Comparative Network Analysis pt. 2
13 January 2010
- 22:5722:57, 13 January 2010 diff hist +1,357 Cbcb:Pop-Lab:Ted-Report →Comparative Network Analysis pt. 2: Added some thoughts on my network alignment project
12 January 2010
- 16:5116:51, 12 January 2010 diff hist +4 m Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:5016:50, 12 January 2010 diff hist +25 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:4916:49, 12 January 2010 diff hist +1,136 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:1916:19, 12 January 2010 diff hist 0 User:Tgibbons No edit summary
- 16:1616:16, 12 January 2010 diff hist +34 Main Page →People: Added mahself to the list. Note: We should really choose a convention for ordering this thing.
- 16:1416:14, 12 January 2010 diff hist +3 m User:Tgibbons No edit summary
- 16:1316:13, 12 January 2010 diff hist +1 User:Tgibbons No edit summary
- 16:1316:13, 12 January 2010 diff hist +49 N User:Tgibbons No edit summary
- 16:0016:00, 12 January 2010 diff hist +38 m Cbcb:Pop-Lab:Ted-Report →Comparative Network Analysis pt. 2
- 16:0016:00, 12 January 2010 diff hist −25,435 Cbcb:Pop-Lab:Ted-Report Restructured the page to link to entries from previous years rather than storing them all on one page
- 15:5115:51, 12 January 2010 diff hist +25,500 N Cbcb:Pop-Lab:Ted-Report-2009 Moved my 2009 progress report entries to a new page to keep things from getting too cluttered current
- 15:4915:49, 12 January 2010 diff hist +177 N Cbcb:Pop-Lab:Ted-Report-2010 Starting a new progress report for 2010 and creating the first entry for week ending January 15 current
- 15:4415:44, 12 January 2010 diff hist +2 m Cbcb:Pop-Lab:Ted-Report →Comparative Network Analysis pt. 2
- 15:4415:44, 12 January 2010 diff hist 0 m Cbcb:Pop-Lab:Ted-Report →January 16, 2010
- 15:4315:43, 12 January 2010 diff hist +177 Cbcb:Pop-Lab:Ted-Report Added an entry for week ending January 16, 2010
24 November 2009
- 21:2421:24, 24 November 2009 diff hist −8 m Cbcb:Pop-Lab:Ted-Report →November 6, 2009
- 21:2321:23, 24 November 2009 diff hist −1 m Cbcb:Pop-Lab:Ted-Report →NCBI Info Summary for Mycobacterium Genome Sequences:
- 21:2321:23, 24 November 2009 diff hist +15 m Cbcb:Pop-Lab:Ted-Report →October 30, 2009
- 21:2121:21, 24 November 2009 diff hist +63 m Cbcb:Pop-Lab:Ted-Report →October 16, 2009
- 21:1921:19, 24 November 2009 diff hist +29 Cbcb:Pop-Lab:Ted-Report →June 5, 2009
16 November 2009
- 20:5920:59, 16 November 2009 diff hist +381 Cbcb:Pop-Lab:Ted-Report →November 13, 2009: Added sub-headings
- 20:4320:43, 16 November 2009 diff hist +663 Cbcb:Pop-Lab:Ted-Report →November 13, 2009: Added information about meeting with Volker
- 20:1120:11, 16 November 2009 diff hist +1,618 Cbcb:Pop-Lab:Ted-Report →November 13, 2009: Added entry for week ending Nov. 13, describing the information I've stored from KEGG
3 November 2009
- 13:4613:46, 3 November 2009 diff hist −67 Cbcb:Pop-Lab:Ted-Report →November 6, 2009: Modified table, added solexa cases
- 06:4306:43, 3 November 2009 diff hist +57 m Cbcb:Pop-Lab:Ted-Report →November 6, 2009
- 06:4206:42, 3 November 2009 diff hist +411 Cbcb:Pop-Lab:Ted-Report →November 6, 2009: Added update for project with Volker
2 November 2009
- 18:2418:24, 2 November 2009 diff hist +14 m Cbcb:Pop-Lab:Ted-Report →November 6, 2009
- 18:2318:23, 2 November 2009 diff hist +13 Cbcb:Pop-Lab:Ted-Report →November 6, 2009
1 November 2009
- 21:5621:56, 1 November 2009 diff hist +96 m Cbcb:Pop-Lab:Ted-Report →October 30, 2009
30 October 2009
- 22:0022:00, 30 October 2009 diff hist +641 Cbcb:Pop-Lab:Ted-Report →November 6, 2009: Added first draft of metagenomic assembly test table
- 21:3821:38, 30 October 2009 diff hist +217 Cbcb:Pop-Lab:Ted-Report →November 6, 2009: Started entry for Nov. 6, 2009
29 October 2009
- 19:4819:48, 29 October 2009 diff hist +4,122 Cbcb:Pop-Lab:Ted-Report →October 30, 2009: Added much info for mycobacterium strains
- 18:5718:57, 29 October 2009 diff hist +48 Cbcb:Pop-Lab:Ted-Report →October 30, 2009
26 October 2009
- 20:2820:28, 26 October 2009 diff hist +600 Cbcb:Pop-Lab:Ted-Report →October 30, 2009: Created entry for week ending Oct 30
- 18:5318:53, 26 October 2009 diff hist +17 m Cbcb:Pop-Lab:Ted-Report →October 16, 2009
- 18:2618:26, 26 October 2009 diff hist +71 Cbcb:Pop-Lab:Ted-Report →October 16, 2009: Added NCBI IDs to genomes
14 October 2009
- 15:0315:03, 14 October 2009 diff hist +679 Cbcb:Pop-Lab:Ted-Report →October 16, 2009: Updated entry
11 October 2009
- 03:4803:48, 11 October 2009 diff hist +140 Cbcb:Pop-Lab:Ted-Report →October 16, 2009: Formatted the table
- 03:4503:45, 11 October 2009 diff hist +140 Cbcb:Pop-Lab:Ted-Report →June 5, 2009: Formatted the table
- 03:3203:32, 11 October 2009 diff hist +32 Cbcb:Pop-Lab:Ted-Report →October 16, 2009: Finished filling out table
- 03:2803:28, 11 October 2009 diff hist +545 Cbcb:Pop-Lab:Ted-Report Added table to October 16 entry
- 03:1503:15, 11 October 2009 diff hist +372 Cbcb:Pop-Lab:Ted-Report →Headline text
9 October 2009
- 21:2121:21, 9 October 2009 diff hist +674 Cbcb:Pop-Lab:Ted-Report →Headline text: Added more stuff
- 20:0320:03, 9 October 2009 diff hist +510 Cbcb:Pop-Lab:Ted-Report →October 9, 2009: Added entry for October 16
- 02:0902:09, 9 October 2009 diff hist +1,215 Cbcb:Pop-Lab:Ted-Report →October 9, 2009: Made a new entry
- 00:2400:24, 9 October 2009 diff hist 0 m Cbcb:Pop-Lab:Ted-Report →August 29, 2009
- 00:2400:24, 9 October 2009 diff hist −4 m Cbcb:Pop-Lab:Ted-Report →August 7, 2009
- 00:2300:23, 9 October 2009 diff hist −21 Cbcb:Pop-Lab:Ted-Report →August 22, 2009: Deleted page
- 00:2300:23, 9 October 2009 diff hist −21 Cbcb:Pop-Lab:Ted-Report →August 15, 2009: Deleted page
- 00:2100:21, 9 October 2009 diff hist 0 m Cbcb:Pop-Lab:Ted-Report →August 8, 2009
25 September 2009
- 20:3920:39, 25 September 2009 diff hist +63 Cbcb:Pop-Lab:Ted-Report →June 5, 2009
- 20:3520:35, 25 September 2009 diff hist +496 Cbcb:Pop-Lab:Ted-Report →September 25, 2009: Created section
13 September 2009
- 04:5404:54, 13 September 2009 diff hist +303 Getting Started in CBCB Added section for printing
24 August 2009
- 19:4119:41, 24 August 2009 diff hist +46 Cbcb:Pop-Lab:Ted-Report →August 8, 2009
- 19:4019:40, 24 August 2009 diff hist 0 Cbcb:Pop-Lab:Ted-Report →August 29, 2009
- 19:3919:39, 24 August 2009 diff hist +104 Cbcb:Pop-Lab:Ted-Report →August 8, 2009: started entry for week ending august 28, 2009
10 August 2009
3 August 2009
- 22:0322:03, 3 August 2009 diff hist +387 Cbcb:Pop-Lab:Ted-Report →August 8, 2009: Added content.
- 21:0321:03, 3 August 2009 diff hist +867 Cbcb:Pop-Lab:Ted-Report →July 24 & 31, 2009
29 July 2009
- 15:3915:39, 29 July 2009 diff hist +598 Cbcb:Pop-Lab:Ted-Report →July 24 & 31, 2009
- 15:2215:22, 29 July 2009 diff hist +26 Cbcb:Pop-Lab:Ted-Report →July 16, 2006: Edited date, added entry for July 24 & 31
16 July 2009
- 14:3914:39, 16 July 2009 diff hist +223 Cbcb:Pop-Lab:Ted-Report No edit summary
- 14:2714:27, 16 July 2009 diff hist +141 Cbcb:Pop-Lab:Ted-Report →July 10, 2009: Started entry for week ending July 16
8 July 2009
- 18:1518:15, 8 July 2009 diff hist +117 Cbcb:Pop-Lab:Ted-Report →July 3, 2009: Added comment about using ChEBI info
- 17:3017:30, 8 July 2009 diff hist −32 Cbcb:Pop-Lab:Ted-Report →July 3, 2009: Reviewed C++ pointers. Decided to not worry about them until memory is an issue.
7 July 2009
- 15:1115:11, 7 July 2009 diff hist −162 Cbcb:Pop-Lab:Ted-Report →July 3, 2009: Settled on/noted handling of reversible reactions
6 July 2009
- 18:5818:58, 6 July 2009 diff hist +424 Cbcb:Pop-Lab:Ted-Report →July 3, 2009: Updated data structure
- 18:2818:28, 6 July 2009 diff hist +723 Cbcb:Pop-Lab:Ted-Report →July 3, 2009: Added entry for week ending July 10
5 July 2009
- 21:5121:51, 5 July 2009 diff hist +552 m Cbcb:Pop-Lab:Ted-Report →July 3, 2009
- 20:5520:55, 5 July 2009 diff hist +66 Cbcb:Pop-Lab:Ted-Report →June 19 & 26, 2009: Added syntax from merge sort command
- 20:5220:52, 5 July 2009 diff hist −10 m Cbcb:Pop-Lab:Ted-Report →July 3, 2009
- 20:5220:52, 5 July 2009 diff hist +1,568 Cbcb:Pop-Lab:Ted-Report →July 3, 2009: Added notes for building/manipulating arrays
- 19:4919:49, 5 July 2009 diff hist +83 m Cbcb:Pop-Lab:Ted-Report →July 3, 2009
- 19:4819:48, 5 July 2009 diff hist +511 Cbcb:Pop-Lab:Ted-Report →July 3, 2009: Added preliminary notes for a proposed metabolic network data structure
2 July 2009
- 18:3818:38, 2 July 2009 diff hist +742 Cbcb:Pop-Lab:Ted-Report →July 3, 2009: Added links to some useful files
- 17:5317:53, 2 July 2009 diff hist +6 m Cbcb:Pop-Lab:Ted-Report →June 19 & 26
- 17:5317:53, 2 July 2009 diff hist +897 Cbcb:Pop-Lab:Ted-Report →June 12, 2009: Added updates for the last 3 weeks
13 June 2009
- 20:2320:23, 13 June 2009 diff hist +433 Summer Reading Group 2009 →Related Papers: Uploaded the papers current
- 19:2119:21, 13 June 2009 diff hist +35 m Cbcb:Pop-Lab:Ted-Report →June 5, 2009
- 19:2019:20, 13 June 2009 diff hist +252 m Cbcb:Pop-Lab:Ted-Report →June 12, 2009
- 19:1319:13, 13 June 2009 diff hist +33 m Cbcb:Pop-Lab:Ted-Report →June 12, 2009
- 19:0919:09, 13 June 2009 diff hist +170 Cbcb:Pop-Lab:Ted-Report →June 5, 2009: Added genome lengths for organisms, tablulated list
12 June 2009
- 18:0618:06, 12 June 2009 diff hist +58 N File:2008nrmicro129-143.pdf 2008 Nature Reviews-Microbiology paper by Bernhard Palsson current
- 18:0618:06, 12 June 2009 diff hist +54 N File:2006nrg130-141.pdf 2006 Nature Reviews-Genetics paper by Bernhard Palsson current
- 18:0518:05, 12 June 2009 diff hist +58 N File:2004nrmicro886.pdf 2004 Nature Reviews-Microbiology paper by Bernhard Palsson current
10 June 2009
- 18:4818:48, 10 June 2009 diff hist +833 Cbcb:Pop-Lab:Ted-Report Added tentative progress report for week ending June 12
4 June 2009
- 20:3420:34, 4 June 2009 diff hist +57 m Cbcb:Pop-Lab:Ted-Report →June 5, 2009
- 20:2420:24, 4 June 2009 diff hist +101 m Cbcb:Pop-Lab:Ted-Report →June 5, 2009
- 16:4416:44, 4 June 2009 diff hist +1,604 Cbcb:Pop-Lab:Ted-Report Posted 3 weeks of progress reports
28 May 2009
- 18:0118:01, 28 May 2009 diff hist +499 N Summer Reading Group 2009 Posted basic information about the reading group
- 17:5217:52, 28 May 2009 diff hist +36 Cbcb:Pop-Lab:Members →Pop-lab group members: Added myself to the Pop lab members list
- 17:2517:25, 28 May 2009 diff hist 0 m Cbcb:Pop-Lab →Meetings/seminars
- 17:1017:10, 28 May 2009 diff hist +215 Cbcb:Pop-Lab →Meetings/seminars: Added link to summer reading group 2009 page
26 May 2009
- 15:2115:21, 26 May 2009 diff hist +303 Getting Started in CBCB →Configuring Your Home Directory and Shell
- 15:1115:11, 26 May 2009 diff hist −346 Main Page Moved "Using the Wiki" section to the "Getting started" page
- 15:1115:11, 26 May 2009 diff hist +346 Getting Started in CBCB Added "Using the Wiki" section feat. a new link to a wiki cheatsheet
- 15:1015:10, 26 May 2009 diff hist +27 Main Page →Using the Wiki
- 15:0815:08, 26 May 2009 diff hist +25 Main Page Added "Using the Wiki" section feat. a new link to a wiki cheatsheet
- 14:5414:54, 26 May 2009 diff hist +15 m Getting Started in CBCB →Understanding the Layout of Available Resources
19 May 2009
- 14:1614:16, 19 May 2009 diff hist +190 Getting Started in CBCB Added my contact info at the top
- 14:1314:13, 19 May 2009 diff hist +37 N Getting started in CBCB Getting started in CBCB moved to Getting Started in CBCB current
- 14:1314:13, 19 May 2009 diff hist 0 m Getting Started in CBCB Getting started in CBCB moved to Getting Started in CBCB
- 02:3302:33, 19 May 2009 diff hist −22 m Main Page →Getting started
- 02:1202:12, 19 May 2009 diff hist 0 m Main Page →Getting started
- 02:1202:12, 19 May 2009 diff hist −65 Main Page →Getting started: Deleted Mihai's "Cbcb:Resources" page after merging the content into "Getting Started in CBCB"
- 02:1002:10, 19 May 2009 diff hist +2,925 Getting Started in CBCB Merged Mihai's "Cbcb:Resources" page into this one
- 00:1400:14, 19 May 2009 diff hist +204 Main Page →Getting started
18 May 2009
- 23:4823:48, 18 May 2009 diff hist +1,842 N Getting Started in CBCB Moved this information to it's own page
- 23:4823:48, 18 May 2009 diff hist −1,816 Main Page →Getting started: Moved the "Getting started" information to it's own page
- 21:1921:19, 18 May 2009 diff hist −1,760 Cbcb:Resources →Getting started in CBCB: Moved the "Getting started" information to the main page current
- 21:1821:18, 18 May 2009 diff hist −8 m Main Page →Getting started
- 21:1821:18, 18 May 2009 diff hist +1,873 Main Page →Getting started: Moved the "Getting started" information from within the Cbcb:Resources page
- 21:1321:13, 18 May 2009 diff hist +838 Cbcb:Resources →Understanding the layout of available resources: Added basic information about storage on the CBCB servers
- 19:5519:55, 18 May 2009 diff hist +416 Cbcb:Resources →Getting building access and room keys: Added info from Denise
- 18:3718:37, 18 May 2009 diff hist +272 Cbcb:Resources →Subscribing to mailing lists: Added link to list of mailing lists
- 18:2518:25, 18 May 2009 diff hist −25 m Cbcb:Resources →Headline text
- 18:2518:25, 18 May 2009 diff hist −4 m Cbcb:Resources No edit summary
15 May 2009
- 19:4619:46, 15 May 2009 diff hist +106 VisANT No edit summary current
- 19:4419:44, 15 May 2009 diff hist +1,132 N VisANT This is just a summary of my notes on VisANT
- 19:3419:34, 15 May 2009 diff hist +4 Cbcb:Pop-Lab:Ted-Report Added link to VisANT page where I'll upload my summary of it's features
- 18:3418:34, 15 May 2009 diff hist +63 Cbcb:Pop-Lab:Ted-Report Figured out how to make linked references
- 18:2518:25, 15 May 2009 diff hist +642 N Cbcb:Pop-Lab:Ted-Report Created page for my progress reports in the Pop Lab. Still don't know wiki syntax very well. Expect to heavily edit formatting.
- 18:0918:09, 15 May 2009 diff hist +34 Cbcb:Pop-Lab Added my name to the list of progress report pages
3 February 2009
- 18:5718:57, 3 February 2009 diff hist +263 Cbcb:Resources Created outline for "Getting started in CBCB" section
25 November 2008
- 00:4400:44, 25 November 2008 diff hist +9 m Pop group meeting No edit summary
- 00:4200:42, 25 November 2008 diff hist +1 m Pop group meeting →10/06/2008
- 00:4100:41, 25 November 2008 diff hist −5 m Pop group meeting →09/29/2008
- 00:4000:40, 25 November 2008 diff hist +612 Pop group meeting Added section for meeting on 11/24/2008 and links for my papers this week