User contributions for Tgibbons
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9 August 2010
- 15:2915:29, 9 August 2010 diff hist +1,226 Cbcb:Pop-Lab:Ted-Report →August 13, 2010: Created a new entry with a subsection for my project ideas
27 July 2010
- 19:3419:34, 27 July 2010 diff hist +288 Cbcb:Pop-Lab:Ted-Report →July 23, 2010: Addedentry for week ending July 30, 2010, and a section for metagenomics papers I should read when I'm done with this book
22 July 2010
- 18:2318:23, 22 July 2010 diff hist +738 Cbcb:Pop-Lab:Ted-Report →Potential Research Projects Inspired by ''Microbial Inhabitants of Humans''
- 17:1817:18, 22 July 2010 diff hist +528 Cbcb:Pop-Lab:Ted-Report →July 23, 2010: Started section to brainstorm research projects I'd like to look into
- 04:1604:16, 22 July 2010 diff hist +206 Cbcb:Pop-Lab:Ted-Report →July 23, 2010
- 03:1903:19, 22 July 2010 diff hist +59 Cbcb:Pop-Lab:Ted-Report →July 23, 2010
- 03:0803:08, 22 July 2010 diff hist +1,729 Cbcb:Pop-Lab:Ted-Report →July 23, 2010: Created entry
4 June 2010
- 18:5818:58, 4 June 2010 diff hist +98 m Communal Software →Introduction
- 18:5618:56, 4 June 2010 diff hist +2,498 N Communal Software Created page
- 18:1018:10, 4 June 2010 diff hist +23 Main Page →Getting started: Created and linked to communal software page
26 May 2010
- 21:5221:52, 26 May 2010 diff hist +57 m Cbcb:Pop-Lab:16S-pipeline 16S analysis pipeline (for Gates project) →Directory structure
- 21:3021:30, 26 May 2010 diff hist −54 Cbcb:Pop-Lab:16S-pipeline 16S analysis pipeline (for Gates project) →Directory structure: Fixed some indeces, but the file structure appears to already be slightly out of date.
5 April 2010
- 15:3215:32, 5 April 2010 diff hist +152 Main Page →Getting started: Added links to the recently created resources pages
29 March 2010
- 02:3702:37, 29 March 2010 diff hist +818 Cbcb:Pop-Lab:Ted-Report →April 2, 2010: Added entry for week ending April 2
- 02:3002:30, 29 March 2010 diff hist +795 Cbcb:Pop-Lab:Ted-Report →March 26, 2010: Finished my thoughts for the week
26 March 2010
- 20:2520:25, 26 March 2010 diff hist +932 Cbcb:Pop-Lab:Ted-Report →February 19, 2010: created an entry for March 26
19 February 2010
- 19:5219:52, 19 February 2010 diff hist +99 Cbcb:Pop-Lab:Ted-Report →February 19, 2010
- 17:4617:46, 19 February 2010 diff hist +793 Cbcb:Pop-Lab:Ted-Report →February 5, 2010: Created entries for the next two weeks
3 February 2010
- 02:0902:09, 3 February 2010 diff hist +1,478 Cbcb:Pop-Lab:Ted-Report →Biomarker Assembly: Finished entry
2 February 2010
- 23:3723:37, 2 February 2010 diff hist +1,438 Cbcb:Pop-Lab:Ted-Report →February 5, 2010: Part two. Still have more to write.
- 23:1923:19, 2 February 2010 diff hist +1,160 Cbcb:Pop-Lab:Ted-Report →UMIACS Resources: Creating a new entry for this week. Saving my work half way through.
- 23:0123:01, 2 February 2010 diff hist +218 Cbcb:Pop-Lab:Ted-Report →Other Observations About the Assemblies: Noted a blunder
26 January 2010
- 13:4513:45, 26 January 2010 diff hist 0 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added data for the 16 million read assembly
- 05:4805:48, 26 January 2010 diff hist +5 m Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 05:4305:43, 26 January 2010 diff hist 0 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Tweaked the mem model for the overlapper
- 05:4205:42, 26 January 2010 diff hist +505 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Continued tweeking the tables and adding more data
- 04:4404:44, 26 January 2010 diff hist +178 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added more data and models for the minimus assemblies on walnut
25 January 2010
- 22:4422:44, 25 January 2010 diff hist +2 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added overlapper performance for 8M reads on walnut
- 18:4018:40, 25 January 2010 diff hist +1 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added tigger performance for 2M reads on walnut
- 18:1518:15, 25 January 2010 diff hist +3 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added overlapper performance for 4M reads on walnut
- 17:2717:27, 25 January 2010 diff hist +705 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added performance table for minimus on walnut
- 16:5916:59, 25 January 2010 diff hist −2,107 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Deleted all the info that I'd compiled into the minimus performance table
- 16:0616:06, 25 January 2010 diff hist +2 Cbcb:Pop-Lab:Ted-Report →UMIACS Resources: made this a sub-heading under this week's entry
- 16:0516:05, 25 January 2010 diff hist +691 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added an updated, accurate subset of the resources page
- 00:1000:10, 25 January 2010 diff hist +26 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Replaced carats with proper superscripts
- 00:0600:06, 25 January 2010 diff hist +147 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added better models derived using openoffice
24 January 2010
- 18:5418:54, 24 January 2010 diff hist +31 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Corrected some statements I'd made based on faulty late-night math
- 18:1318:13, 24 January 2010 diff hist 0 m Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 18:1318:13, 24 January 2010 diff hist −101 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added data for the 8 million read assembly
- 18:1018:10, 24 January 2010 diff hist +105 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added data for the 8 million read assembly
- 18:0518:05, 24 January 2010 diff hist +1 m Cbcb:Pop-Lab:Ted-Report →January 29, 2010
- 18:0518:05, 24 January 2010 diff hist +893 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 18:0218:02, 24 January 2010 diff hist −734 Cbcb:Pop-Lab:Ted-Report →Run Time Analysis
- 18:0218:02, 24 January 2010 diff hist +251 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added a lousy model for the run time of the minimus contigger
- 17:5217:52, 24 January 2010 diff hist +38 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 17:5117:51, 24 January 2010 diff hist +38 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added informative sub-heading. I'm thinking about making that a thing this year.
- 17:5017:50, 24 January 2010 diff hist +1,036 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Finally added the table
- 17:1617:16, 24 January 2010 diff hist +1,508 Cbcb:Pop-Lab:Ted-Report →January 22, 2010: fin.
- 16:3916:39, 24 January 2010 diff hist +8 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:1216:12, 24 January 2010 diff hist +3,857 Cbcb:Pop-Lab:Ted-Report →January 15, 2010: Added a post for Jan 22. Not done yet, but need food badly or will die. bbl
- 15:3815:38, 24 January 2010 diff hist +68 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added data for the 4 million & million read runs
- 07:0907:09, 24 January 2010 diff hist +125 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added moar values
- 06:4906:49, 24 January 2010 diff hist +230 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Fixed the models I was using to estimate minimus run time
- 06:3606:36, 24 January 2010 diff hist +735 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added some general notes about the minimus assemblies
- 06:1806:18, 24 January 2010 diff hist +11 Cbcb:Pop-Lab:Ted-Report →January 29, 2010
- 06:0906:09, 24 January 2010 diff hist +120 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Partially updated with information about the 20 million read minimus assembly
23 January 2010
- 23:2323:23, 23 January 2010 diff hist +799 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added more data, plus a couple of questionable models for the minimus run time
- 22:0822:08, 23 January 2010 diff hist −14 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Updated some values
- 22:0122:01, 23 January 2010 diff hist +20 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Updated some values
- 21:2321:23, 23 January 2010 diff hist +634 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added more data. I really need to put this in a table.
- 20:5720:57, 23 January 2010 diff hist +394 Cbcb:Pop-Lab:Ted-Report →January 15, 2010: Started an entry for week ending Jan 29, 2010
22 January 2010
- 23:1323:13, 22 January 2010 diff hist −2 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary current
21 January 2010
- 02:4302:43, 21 January 2010 diff hist 0 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary
20 January 2010
- 21:2421:24, 20 January 2010 diff hist 0 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary
- 16:4316:43, 20 January 2010 diff hist −51 Cbcb:Pop-Lab:How-to Redirected the "getting started in CBCB" link to the page I created current
- 16:3816:38, 20 January 2010 diff hist −1 m Cbcb:Pop-Lab:Challenges No edit summary current
19 January 2010
- 17:1317:13, 19 January 2010 diff hist +492 Getting Started in CBCB →Configuring Your Home Directory and Shell: Added config instructions for .bash_profile
- 16:4816:48, 19 January 2010 diff hist +803 Getting Started in CBCB →Configuring Your Home Directory and Shell: Replaced my email address with actual instructions for configuring a fresh bashrc file
14 January 2010
- 19:4219:42, 14 January 2010 diff hist −10 m Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 18:3418:34, 14 January 2010 diff hist +93 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation: Added some commands for running minimus
- 18:0718:07, 14 January 2010 diff hist +71 Cbcb:Pop-Lab:Ted-Report →Comparative Network Analysis pt. 2
13 January 2010
- 22:5722:57, 13 January 2010 diff hist +1,357 Cbcb:Pop-Lab:Ted-Report →Comparative Network Analysis pt. 2: Added some thoughts on my network alignment project
12 January 2010
- 16:5116:51, 12 January 2010 diff hist +4 m Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:5016:50, 12 January 2010 diff hist +25 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:4916:49, 12 January 2010 diff hist +1,136 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:1916:19, 12 January 2010 diff hist 0 User:Tgibbons No edit summary
- 16:1616:16, 12 January 2010 diff hist +34 Main Page →People: Added mahself to the list. Note: We should really choose a convention for ordering this thing.
- 16:1416:14, 12 January 2010 diff hist +3 m User:Tgibbons No edit summary
- 16:1316:13, 12 January 2010 diff hist +1 User:Tgibbons No edit summary
- 16:1316:13, 12 January 2010 diff hist +49 N User:Tgibbons No edit summary
- 16:0016:00, 12 January 2010 diff hist +38 m Cbcb:Pop-Lab:Ted-Report →Comparative Network Analysis pt. 2
- 16:0016:00, 12 January 2010 diff hist −25,435 Cbcb:Pop-Lab:Ted-Report Restructured the page to link to entries from previous years rather than storing them all on one page
- 15:5115:51, 12 January 2010 diff hist +25,500 N Cbcb:Pop-Lab:Ted-Report-2009 Moved my 2009 progress report entries to a new page to keep things from getting too cluttered current
- 15:4915:49, 12 January 2010 diff hist +177 N Cbcb:Pop-Lab:Ted-Report-2010 Starting a new progress report for 2010 and creating the first entry for week ending January 15 current
- 15:4415:44, 12 January 2010 diff hist +2 m Cbcb:Pop-Lab:Ted-Report →Comparative Network Analysis pt. 2
- 15:4415:44, 12 January 2010 diff hist 0 m Cbcb:Pop-Lab:Ted-Report →January 16, 2010
- 15:4315:43, 12 January 2010 diff hist +177 Cbcb:Pop-Lab:Ted-Report Added an entry for week ending January 16, 2010
24 November 2009
- 21:2421:24, 24 November 2009 diff hist −8 m Cbcb:Pop-Lab:Ted-Report →November 6, 2009
- 21:2321:23, 24 November 2009 diff hist −1 m Cbcb:Pop-Lab:Ted-Report →NCBI Info Summary for Mycobacterium Genome Sequences:
- 21:2321:23, 24 November 2009 diff hist +15 m Cbcb:Pop-Lab:Ted-Report →October 30, 2009
- 21:2121:21, 24 November 2009 diff hist +63 m Cbcb:Pop-Lab:Ted-Report →October 16, 2009
- 21:1921:19, 24 November 2009 diff hist +29 Cbcb:Pop-Lab:Ted-Report →June 5, 2009
16 November 2009
- 20:5920:59, 16 November 2009 diff hist +381 Cbcb:Pop-Lab:Ted-Report →November 13, 2009: Added sub-headings
- 20:4320:43, 16 November 2009 diff hist +663 Cbcb:Pop-Lab:Ted-Report →November 13, 2009: Added information about meeting with Volker
- 20:1120:11, 16 November 2009 diff hist +1,618 Cbcb:Pop-Lab:Ted-Report →November 13, 2009: Added entry for week ending Nov. 13, describing the information I've stored from KEGG
3 November 2009
- 13:4613:46, 3 November 2009 diff hist −67 Cbcb:Pop-Lab:Ted-Report →November 6, 2009: Modified table, added solexa cases
- 06:4306:43, 3 November 2009 diff hist +57 m Cbcb:Pop-Lab:Ted-Report →November 6, 2009
- 06:4206:42, 3 November 2009 diff hist +411 Cbcb:Pop-Lab:Ted-Report →November 6, 2009: Added update for project with Volker